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942 series

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Accession	Title	Series type(s)	Organism(s)	Samples	Supplementary	Contact	Release date
Filter		Methylation profiling by high throughput sequencing	Homo sapiens		TXT
GSE27619	Deep sequencing reveals distinct patterns of DNA methylation and transcript isoform regulation in prostate cancer	Expression profiling by array Methylation profiling by genome tiling array Methylation profiling by high throughput sequencing Expression profiling by high throughput sequencing	Homo sapiens	39	BAM TXT	Jung Kim	May 03, 2011
GSE33579	Base-resolution analyses of parent-of-origin and sequence dependent allele specific DNA methylation in the mouse genome (MRE-seq)	Methylation profiling by high throughput sequencing	Homo sapiens Mus musculus	5	BAM TXT SRA Run Selector	Wei Xie	Feb 15, 2012
GSE33722	Base-resolution analyses of sequence and parent-of-origin dependent DNA methylation	Expression profiling by high throughput sequencing Methylation profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens Mus musculus	17	BAM BED TXT	Wei Xie	Feb 15, 2012
GSE36114	Genome-wide analysis of histone modification, protein-DNA binding, cytosine methylation and transcriptome data in mouse and human ES cells and pig iPS cells	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Methylation profiling by high throughput sequencing	Homo sapiens Mus musculus Sus scrofa	47	BAM BED GTF TXT SRA Run Selector	Pengfei Yu	Feb 28, 2012
GSE47966	Global epigenomic reconfiguration during mammalian brain development	Methylation profiling by high throughput sequencing Expression profiling by high throughput sequencing	Homo sapiens Mus musculus	65	BAM TXT SRA Run Selector	Joseph R Ecker	Jul 03, 2013
GSE225975	Direct enzymatic sequencing of 5-methylcytosine at single-base resolution	Methylation profiling by high throughput sequencing	Cloning vector pUC19 Escherichia phage Lambda Escherichia phage T4 Homo sapiens	35	BAM TXT	Rahul M. Kohli	Apr 24, 2023
GSE45342	Fundamental differences in promoter CpG island DNA hypermethylation between human cancer and genetically engineered mouse models of cancer	Methylation profiling by genome tiling array Methylation profiling by high throughput sequencing	Homo sapiens Mus musculus	31	BAR CEL TXT	Scott J. Diede	Oct 10, 2013
GSE40429	96 mRRBS libraries: Gel-free multiplexed reduced representation bisulfite sequencing for large-scale DNA	Methylation profiling by high throughput sequencing	Homo sapiens	96	BB TXT SRA Run Selector	Kendell Clement	Aug 29, 2012
GSE112479	The RNA helicase DDX6 regulates self-renewal and differentiation of human and mouse stem cells	Expression profiling by high throughput sequencing Methylation profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens	100	BB BED BW CSV TXT	Bruno Di Stefano	Oct 03, 2019
GSE118716	Epigenetic reprogramming at estrogen-receptor binding sites alters 3D chromatin landscape in endocrine resistant breast cancer	Genome binding/occupancy profiling by high throughput sequencing Other Expression profiling by high throughput sequencing Methylation profiling by high throughput sequencing	Homo sapiens	40	BB BW HIC TXT VCF	Joanna Achinger-Kawecka	Dec 11, 2019
GSE139817	Chromatin dynamics reveal circadian control of human in vitro islet maturation	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Methylation profiling by high throughput sequencing	Homo sapiens	169	BB BED TXT	Juan R Alvarez-Dominguez	Nov 02, 2019
GSE15007	Digital DNA methylation analysis of stem cell reprogramming by targeted bisulfite sequencing	Methylation profiling by high throughput sequencing	Homo sapiens	12	BED TXT	Kun Zhang	Apr 27, 2009
GSE17001	High definition profiling of mammalian DNA methylation by array capture and single molecule bisulfite sequencing	Methylation profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens	4	BED TXT SRA Run Selector	Emily Hodges	Jul 08, 2009
GSE21242	Chromatin and Sequence Features that Define the Fine and Gross Structure of Genomics Methylation Patterns	Methylation profiling by high throughput sequencing	Homo sapiens Mus musculus	8	BED TXT SRA Run Selector	John R. Edwards	Apr 16, 2010
GSE26592	Neighboring genomic regions influence differential methylation patterns of CpG islands in endometrial and breast cancers	Methylation profiling by high throughput sequencing	Homo sapiens	243	BED TXT SRA Run Selector	Fei Gu	Jan 11, 2012
GSE31418	Genome-wide maps of methylation state in cisplatin sensitive and resistant ovarian cancer cell line	Methylation profiling by high throughput sequencing	Homo sapiens	2	BED TXT SRA Run Selector	Biaoyang Lin	Apr 11, 2012
GSE33930	Genome-wide mapping of histone methylation in human melanocytes and melanoma cell lines	Genome binding/occupancy profiling by high throughput sequencing Methylation profiling by high throughput sequencing	Homo sapiens	12	BED TXT SRA Run Selector	HAI LONG	Dec 01, 2013
GSE35294	H3K79 methylation - cell cycle	Genome binding/occupancy profiling by high throughput sequencing Methylation profiling by high throughput sequencing	Homo sapiens	11	BED TXT SRA Run Selector	Mirit I Aladjem	Jun 06, 2013
GSE36173	Base Resolution Analysis of 5-Hydroxymethylcytosine in the Mammalian Genome	Methylation profiling by high throughput sequencing	Homo sapiens Mus musculus	3	BED TXT SRA Run Selector	Gary Chung Hon	May 17, 2012
GSE39068	Comparative genome-wide DNA methylation analysis of colorectal tumor and matched normal tissues	Expression profiling by high throughput sequencing Methylation profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens	68	BED TXT WIG SRA Run Selector	Arjen Brinkman	Oct 26, 2012