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270 series

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Accession	Title	Series type(s)	Organism(s)	Samples	Supplementary	Contact	Release date
Filter		Methylation profiling by high throughput sequencing	Arabidopsis thaliana		SRA Run Selector
GSE21152	Conservation and divergence of methylation patterning in plants and animals	Methylation profiling by high throughput sequencing	Apis mellifera Arabidopsis thaliana Chlamydomonas reinhardtii Ciona intestinalis Danio rerio Mus musculus Oryza sativa Populus trichocarpa	14	TXT SRA Run Selector	matteo Pellegrini	Apr 09, 2010
GSE75071	On the Origin and Evolutionary Consequences of Gene Body DNA Methylation	Expression profiling by high throughput sequencing Methylation profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Third-party reanalysis	Arabidopsis lyrata Arabidopsis thaliana Brassica oleracea Brassica rapa Capsella rubella Eutrema salsugineum	44	BED TSV SRA Run Selector	Robert J Schmitz	Jul 11, 2016
GSE10966	Highly integrated epigenome maps in Arabidopsis - whole genome shotgun bisulfite sequencing	Methylation profiling by high throughput sequencing	Arabidopsis thaliana	4	TXT SRA Run Selector	Joseph R Ecker	Apr 21, 2008
GSE14570	Extensive demethylation of repetitive elements during seed development underlies gene imprinting	Methylation profiling by genome tiling array Methylation profiling by high throughput sequencing	Arabidopsis thaliana	10	BEDGRAPH GFF PAIR TXT SRA Run Selector	Jorja Henikoff	Jun 12, 2009
GSE15922	Genome-wide demethylation of Arabidopsis endosperm	Methylation profiling by high throughput sequencing	Arabidopsis thaliana	4	GFF TXT SRA Run Selector	Toshiro Nishimura	Jun 16, 2009
GSE16071	Loss of H3K27 monomethylation leads to DNA-methylation-independent release of gene silencing	Methylation profiling by high throughput sequencing	Arabidopsis thaliana	2	SRA Run Selector	matteo Pellegrini	Jun 01, 2009
GSE21821	Relationship between nucleosome positioning and DNA methylation: Bisulfite-Seq, ChIP-Seq, and Mnase-Seq	Methylation profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Arabidopsis thaliana Homo sapiens	4	TXT SRA Run Selector	matteo Pellegrini	May 29, 2010
GSE33071	Whole genome bisulfite sequencing of idm1, rdd, ros1 mutants and Col-0 WT	Methylation profiling by high throughput sequencing	Arabidopsis thaliana	8	WIG SRA Run Selector	Jian-Kang Zhu	Jun 17, 2012
GSE34657	Genome-wide profiling of DNA methylation in two Arabidopsis ecotypes and their reciprocal hybrids - Bisulfite-seq	Methylation profiling by high throughput sequencing	Arabidopsis thaliana	12	MAP SRA Run Selector	Hang He	Dec 22, 2011
GSE35542	Trans Chromosomal Methylation in Arabidopsis hybrids	Methylation profiling by high throughput sequencing	Arabidopsis thaliana	4	BSP TXT SRA Run Selector	Jennifer Taylor	Feb 05, 2012
GSE36143	An IDN2-containing complex involved in RNA-directed DNA methylation in Arabidopsis [BS-seq]	Methylation profiling by high throughput sequencing	Arabidopsis thaliana	5	TXT SRA Run Selector	Christopher Joel Hale	May 26, 2012
GSE36783	High-throughput Illumina sequencing of bisulfite transformed genomic DNA from Arabidopsis thaliana wild-type, msh1 mutant and MSH1-epiF3 lines	Methylation profiling by high throughput sequencing	Arabidopsis thaliana	6	TXT SRA Run Selector	Ying-Zhi Xu	Jan 01, 2014
GSE36845	Selection of epigenetic variation in Arabidopsis [Bisulfite-Seq]	Methylation profiling by high throughput sequencing	Arabidopsis thaliana	8	TXT SRA Run Selector	Christian Heichinger	Sep 01, 2014
GSE37644	MORC family ATPases required for heterochromatin condensation and gene silencing	Non-coding RNA profiling by high throughput sequencing Expression profiling by high throughput sequencing Methylation profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Arabidopsis thaliana	26	TXT WIG SRA Run Selector	Shawn J. Cokus	May 03, 2012
GSE38286	DNA methyltransferases are required to induce heterochromatic re-replication in Arabidopsis.	Expression profiling by high throughput sequencing Genome variation profiling by high throughput sequencing Methylation profiling by high throughput sequencing	Arabidopsis thaliana	43	TXT SRA Run Selector	Hume Stroud	Aug 07, 2012
GSE38935	Active DNA demethylation in plant companion cells reinforces transposon methylation in gametes	Methylation profiling by high throughput sequencing	Arabidopsis thaliana	10	GFF SRA Run Selector	Toshiro Nishimura	Sep 21, 2012
GSE38991	Genome-wide DNA methylation maps of Arabidopsis thaliana in two seasons	Methylation profiling by high throughput sequencing	Arabidopsis thaliana	4	TXT SRA Run Selector	Yu-Xian Zhu	Jul 21, 2013
GSE39045	Deposition of histone variant H2A.Z within gene bodies regulates responsive genes	Expression profiling by high throughput sequencing Other Methylation profiling by high throughput sequencing	Arabidopsis thaliana	38	GFF SRA Run Selector	Toshiro Nishimura	Dec 13, 2012
GSE39247	The DDR complex facilitates the genome-wide association of RNA Polymerase V to promoters and evolutionarily young transposons	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Methylation profiling by high throughput sequencing	Arabidopsis thaliana	11	WIG SRA Run Selector	Christopher Joel Hale	Aug 05, 2012
GSE39901	Comprehensive analysis of silencing mutants reveals complex regulation of the Arabidopsis methylome.	Methylation profiling by high throughput sequencing Expression profiling by high throughput sequencing	Arabidopsis thaliana	92	WIG SRA Run Selector	Hume Stroud	Jan 11, 2013