GEO Browser - GEO

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34 series

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Accession	Title	Series type(s)	Organism(s)	Samples	Supplementary	Contact	Release date
Filter		Methylation profiling by high throughput sequencing	Arabidopsis thaliana		GFF
GSE96994	DDM1/Lsh remodelers allow methylation of DNA wrapped in nucleosomes	Methylation profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Expression profiling by high throughput sequencing Third-party reanalysis	Arabidopsis thaliana	15	BED BW GFF TXT SRA Run Selector	David B. Lyons	Nov 15, 2017
GSE176526	Linker histone H1 drives heterochromatin condensation via phase separation in Arabidopsis	Genome binding/occupancy profiling by high throughput sequencing Methylation profiling by high throughput sequencing Other	Arabidopsis thaliana	14	BED GFF TXT SRA Run Selector	Xiaoqi Feng	Feb 15, 2024
GSE14570	Extensive demethylation of repetitive elements during seed development underlies gene imprinting	Methylation profiling by genome tiling array Methylation profiling by high throughput sequencing	Arabidopsis thaliana	10	BEDGRAPH GFF PAIR TXT SRA Run Selector	Jorja Henikoff	Jun 12, 2009
GSE85975	DNA methylation dynamics during early plant life	Methylation profiling by high throughput sequencing Non-coding RNA profiling by high throughput sequencing	Arabidopsis thaliana	5	BEDGRAPH GFF SRA Run Selector	Daniel Bouyer	Aug 23, 2017
GSE68860	Genome-wide single-molecule sequencing of 6-methyladenine in eukaryotes	Methylation profiling by high throughput sequencing Third-party reanalysis	Arabidopsis thaliana Auricularia delicata Caenorhabditis elegans Chlamydomonas reinhardtii Drosophila melanogaster Nannochloropsis oceanica Saccharomyces cerevisiae	11	BW CSV GFF SRA Run Selector	Denis Tolkunov	Sep 01, 2017
GSE122394	DNA methylation and histone H1 jointly repress transposable elements and aberrant intragenic transcripts	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Methylation profiling by high throughput sequencing Other	Arabidopsis thaliana	132	BW GFF SRA Run Selector	Jaemyung Choi	Nov 20, 2019
GSE179796	Histone H1 prevents non-CG methylation-mediated small RNA biogenesis in Arabidopsis heterochromatin	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Methylation profiling by high throughput sequencing	Arabidopsis thaliana	62	BW GFF SRA Run Selector	Jaemyung Choi	Dec 01, 2021
GSE183785	Epigenetic inheritance mediates phenotypic evolution in natural populations	Expression profiling by high throughput sequencing Methylation profiling by high throughput sequencing	Arabidopsis thaliana	25	BW GFF SRA Run Selector	Jaemyung Choi	Jun 30, 2022
GSE15922	Genome-wide demethylation of Arabidopsis endosperm	Methylation profiling by high throughput sequencing	Arabidopsis thaliana	4	GFF TXT SRA Run Selector	Toshiro Nishimura	Jun 16, 2009
GSE38935	Active DNA demethylation in plant companion cells reinforces transposon methylation in gametes	Methylation profiling by high throughput sequencing	Arabidopsis thaliana	10	GFF SRA Run Selector	Toshiro Nishimura	Sep 21, 2012
GSE39045	Deposition of histone variant H2A.Z within gene bodies regulates responsive genes	Expression profiling by high throughput sequencing Other Methylation profiling by high throughput sequencing	Arabidopsis thaliana	38	GFF SRA Run Selector	Toshiro Nishimura	Dec 13, 2012
GSE40501	Reprogramming of DNA methylation in pollen guides epigenetic inheritance via small RNA.	Methylation profiling by high throughput sequencing	Arabidopsis thaliana	3	GFF SRA Run Selector	Joseph Calarco	Aug 31, 2012
GSE41302	DDM1 and RdDM are the major regulators of transposon DNA methylation in Arabidopsis	Expression profiling by high throughput sequencing Methylation profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Arabidopsis thaliana	33	GFF SRA Run Selector	Toshiro Nishimura	Apr 17, 2013
GSE46428	High-throughput sequencing of methylated cytosine enriched by modification-dependent restriction endonuclease MspJI	Methylation profiling by high throughput sequencing	Arabidopsis thaliana	2	GFF TXT SRA Run Selector	Desheng Gong	May 01, 2013
GSE67813	XCT is a novel regulator of chromatin functionally conserved across eukaryotes	Expression profiling by high throughput sequencing Methylation profiling by high throughput sequencing	Arabidopsis thaliana	18	GFF TSV SRA Run Selector	Stacey Harmer	May 01, 2019
GSE76648	Global Genome Repair factors are essential for shaping the DNA methylation landscape in Arabidopsis [BS-seq]	Methylation profiling by high throughput sequencing	Arabidopsis thaliana	2	GFF SRA Run Selector	Jean Molinier	Aug 17, 2016
GSE76651	Global Genome Repair factors are essential for shaping the DNA methylation landscape in Arabidopsis	Methylation profiling by high throughput sequencing Non-coding RNA profiling by high throughput sequencing Other	Arabidopsis thaliana	5	GFF	Jean Molinier	Aug 17, 2016
GSE81596	DNA N6-adenine methylation in Arabidopsis thaliana (methylation)	Methylation profiling by high throughput sequencing	Arabidopsis thaliana	1	GFF SRA Run Selector	Hao Yu	Apr 16, 2018
GSE81597	DNA N6-adenine methylation in Arabidopsis thaliana	Expression profiling by high throughput sequencing Methylation profiling by high throughput sequencing	Arabidopsis thaliana	8	GFF TXT	Hao Yu	Apr 16, 2018
GSE86583	Sexual-lineage-specific DNA methylation regulates meiosis in Arabidopsis	Methylation profiling by high throughput sequencing Expression profiling by high throughput sequencing	Arabidopsis thaliana	20	GFF XLSX SRA Run Selector	Xiaoqi Feng	Dec 12, 2017