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99 series

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Accession	Title	Series type(s)	Organism(s)	Samples	Supplementary	Contact	Release date
Filter		Methylation profiling by high throughput sequencing	Arabidopsis thaliana		BW
GSE129249	Topoisomerase VI participates to a chromatin barrier-like function that prevents heterochromatin spreading in euchromatic islands	Expression profiling by array Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Methylation profiling by high throughput sequencing	Arabidopsis thaliana	34	BIGWIG BW CEL	Christophe Laloi	Apr 03, 2019
GSE67799	A novel BRAT1-BRP1 complex recognizes histone acetylation and mediates active DNA demethylation and transcriptional activation in Arabidopsis	Expression profiling by high throughput sequencing Methylation profiling by high throughput sequencing	Arabidopsis thaliana	16	BW	huanwei huang	Apr 14, 2015
GSE80303	The SUMO E3 ligase-like proteins PIAL1 and PIAL2 interact with MOM1 and form a novel complex required for transcriptional silencing	Expression profiling by high throughput sequencing Methylation profiling by high throughput sequencing	Arabidopsis thaliana	13	BW	Yongqiang Li	Apr 15, 2016
GSE80370	Two components of the RNA-directed DNA methylation pathway associate with MORC6 and silence loci targeted by MORC6 in Arabidopsis	Expression profiling by high throughput sequencing Methylation profiling by high throughput sequencing	Arabidopsis thaliana	13	BW DIFF SRA Run Selector	Yongqiang Li	Apr 19, 2016
GSE81407	Deubiquitinating Enzyme OTU5 Contributes to DNA Methylation Patterns and Is Critical for Phosphate Nutrition Signals	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Methylation profiling by high throughput sequencing	Arabidopsis thaliana	36	BW CGMAP TXT SRA Run Selector	Pao-Yang Chen	Nov 02, 2017
GSE94065	5-Methylcytosine RNA methylation in Arabidopsis thaliana	Expression profiling by high throughput sequencing Methylation profiling by high throughput sequencing	Arabidopsis thaliana	8	BW TXT	Hao Yu	Oct 05, 2017
GSE96994	DDM1/Lsh remodelers allow methylation of DNA wrapped in nucleosomes	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Methylation profiling by high throughput sequencing Third-party reanalysis	Arabidopsis thaliana	15	BED BW GFF TXT SRA Run Selector	David B. Lyons	Nov 15, 2017
GSE98214	Peroxisomal β-oxidation regulates histone acetylation and DNA methylation in Arabidopsis	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Methylation profiling by high throughput sequencing	Arabidopsis thaliana	35	BEDGRAPH BW XLS SRA Run Selector	Yusheng Zhao	Apr 25, 2018
GSE98872	Comparative Epigenomics Reveals Hierarchical Regulation of Non-CG Methylation in Arabidopsis	Expression profiling by high throughput sequencing Methylation profiling by high throughput sequencing	Arabidopsis thaliana	8	BW TXT SRA Run Selector	C. Jake Harris	Dec 31, 2017
GSE103924	Topoisomerase VI participates to a chromatin barrier-like function that prevents heterochromatin spreading in euchromatic islands (HTS)	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Methylation profiling by high throughput sequencing	Arabidopsis thaliana	28	BIGWIG BW XLSX SRA Run Selector	Christophe Laloi	Sep 12, 2018
GSE108401	The Complex Architecture of Transgene Insertions	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Methylation profiling by high throughput sequencing Non-coding RNA profiling by high throughput sequencing	Arabidopsis thaliana	39	BW TSV TXT SRA Run Selector	Joseph R Ecker	Mar 16, 2018
GSE108414	A DNA methylation reader complex that enhances gene transcription	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Methylation profiling by high throughput sequencing	Arabidopsis thaliana	89	BW SRA Run Selector	C. Jake Harris	Dec 06, 2018
GSE109115	Targeted DNA demethylation of the Arabidopsis genome using the Human TET1 catalytic domain.	Expression profiling by high throughput sequencing Methylation profiling by high throughput sequencing	Arabidopsis thaliana	78	BW TXT SRA Run Selector	Wanlu Liu	Feb 18, 2018
GSE116068	The PEAT protein complexes are required for histone deacetylation and heterochromatin silencing	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Methylation profiling by high throughput sequencing Non-coding RNA profiling by high throughput sequencing	Arabidopsis thaliana	27	BW	xinjian He	Jun 21, 2018
GSE116581	fruitENCODE: An encyclopedia of DNA elements for fruit ripening	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Methylation profiling by high throughput sequencing	Arabidopsis thaliana Carica papaya Citrullus lanatus Cucumis melo Cucumis sativus Fragaria vesca Malus domestica Musa acuminata AAA Group Oryza sativa Prunus persica Pyrus x bretschneideri Solanum lycopersicum Vitis vinifera	282	BW NARROWPEAK TBI TXT SRA Run Selector	Silin Zhong	Jul 04, 2018
GSE118063	Multivalent H3K9me2 Reader ADCP1 Functions as a plant HP1 to Maintain Epigenetic Silencing	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Methylation profiling by high throughput sequencing	Arabidopsis thaliana	22	BW GTF SRA Run Selector	QIANWEN SUN	Nov 15, 2018
GSE122394	DNA methylation and histone H1 jointly repress transposable elements and aberrant intragenic transcripts	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Methylation profiling by high throughput sequencing Other	Arabidopsis thaliana	132	BW GFF SRA Run Selector	Jaemyung Choi	Nov 20, 2019
GSE124486	A methylated-DNA-binding complex required for plant development mediates transcriptional activation of promoter methylated genes	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Methylation profiling by high throughput sequencing	Arabidopsis thaliana	16	BW	xinjian He	Dec 30, 2018
GSE124546	Co-targeting RNA Polymerases IV and V promotes efficient de novo DNA methylation in Arabidopsis	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Methylation profiling by high throughput sequencing Non-coding RNA profiling by high throughput sequencing	Arabidopsis thaliana	246	BW TXT	Wanlu Liu	Feb 07, 2019
GSE125230	Site-specific manipulation of Arabidopsis loci using CRISPR-Cas9 SunTag systems	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Methylation profiling by high throughput sequencing	Arabidopsis thaliana	122	BED BW TXT WIG SRA Run Selector	Ashot Papikian	Jan 22, 2019