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Accession	Title	Series type(s)	Organism(s)	Samples	GDS	Supplementary	Contact	Release date
Filter		Methylation profiling by high throughput sequencing	synthetic construct
GSE51170	Identification of building principles of methylation states at CG rich regions by high-throughput editing of a mammalian genome	Methylation profiling by high throughput sequencing	Escherichia coli Mus musculus synthetic construct	19		TXT SRA Run Selector	Dirk Schuebeler	Sep 30, 2014
GSE62589	Integrative Analysis of Transcriptomic and Epigenomic Data to Reveal Regulation Patterns for Osteoporosis Risk	Expression profiling by array Methylation profiling by high throughput sequencing Non-coding RNA profiling by array	Homo sapiens synthetic construct	30		CEL	shishi min	Oct 22, 2014
GSE62777	Integrative analyses of human reprogramming reveal dynamic nature of induced pluripotency	Expression profiling by high throughput sequencing Non-coding RNA profiling by high throughput sequencing Methylation profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Other	Homo sapiens Mus musculus synthetic construct	317		BED TDF TXT	Shannan J Ho Sui	Jul 16, 2015
GSE63371	Base-resolution detection of N4-methylcytosine in genomic DNA using 4mC-TAB-seq	Methylation profiling by high throughput sequencing	Caldicellulosiruptor acetigenus synthetic construct	7		TSV SRA Run Selector	Robert J Schmitz	Jul 11, 2015
GSE80973	Single-cell 5hmC sequencing reveals chromosome-wide cell-to-cell variability and enables lineage reconstruction	Methylation profiling by high throughput sequencing	Mus musculus synthetic construct	10		TXT SRA Run Selector	Siddharth Subhas Dey	May 03, 2016
GSE83510	Novel features of telomeres biology revealed by the absence of telomeric DNA methylation	Methylation profiling by high throughput sequencing	synthetic construct	8		CGMAP WIG SRA Run Selector	matteo pellegrini	Jun 21, 2016
GSE84589	Cis-regulatory landscape of four cell types of the retina	Expression profiling by high throughput sequencing Methylation profiling by high throughput sequencing Other	Adeno-associated virus Mus musculus synthetic construct	64		TAB SRA Run Selector	Dirk Schuebeler	Oct 25, 2017
GSE109262	Joint profiling of chromatin accessibility, DNA methylation and transcription in single cells	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Methylation profiling by high throughput sequencing	Mus musculus synthetic construct	244		TSV TXT SRA Run Selector	Felix Krueger	Jan 17, 2018
GSE114849	DNA methylation and mirRNA/mRNA Expression data from Human Mammary Epithelial Cells (HMECs) transduced with shp53, HRASV12, WNT1 and CCNE1	Methylation profiling by high throughput sequencing Non-coding RNA profiling by array Expression profiling by array	Homo sapiens synthetic construct	54		CEL IGV	stanislas P du manoir	May 01, 2020
GSE152639	Structure of DNA methyltransferases DNMT3A/DNMT3B bound to a nucleosome [seq]	Methylation profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	synthetic construct	20		BW FA VCF SRA Run Selector	Peter A Jones	Jun 17, 2020
GSE152640	Structure of DNA methyltransferases DNMT3A/DNMT3B bound to a nucleosome	Methylation profiling by genome tiling array Methylation profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens synthetic construct	36		BW IDAT VCF	Peter A Jones	Jun 17, 2020
GSE160457	An all-to-all approach to the identification of sequence-specific readers for epigenetic DNA modifications on cytosine	Other Methylation profiling by high throughput sequencing	Homo sapiens synthetic construct	20		TAR XLS SRA Run Selector	Heng Zhu	Dec 01, 2020
GSE161676	Identifying non-genetic determinants of malignant clonal fitness at single cell resolution	Expression profiling by high throughput sequencing Other Methylation profiling by high throughput sequencing	Mus musculus synthetic construct	271		BED MTX SEG TSV VCF	Mark Dawson	Nov 08, 2021
GSE166259	Synthetic spike-in controls enable sensitive and reproducible cell-free methylome interrogation	Methylation profiling by high throughput sequencing	Homo sapiens synthetic construct	25		BED SRA Run Selector	Michael Hoffman	Feb 16, 2021
GSE197501	Combinatorial quantification of 5mC and 5hmC at individual CpG dyads and the transcriptome in single cells reveals modulators of DNA methylation maintenance fidelity	Methylation profiling by high throughput sequencing Other	Homo sapiens Mus musculus synthetic construct	52		CSV MTX RDS TSV TXT XLSX	Alex Chialastri	Aug 07, 2023