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1369 series

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Accession	Title	Series type(s)	Organism(s)	Samples	Supplementary	Contact	Release date
Filter		Methylation profiling by high throughput sequencing	Mus musculus		SRA Run Selector
GSE27322	de novo DNA Methylation Balances Hematopoietic Stem Cell Self-Renewal and Differentiation	Expression profiling by array Methylation profiling by high throughput sequencing	Mus musculus	10	BAM BED CEL SRA Run Selector	deqiang sun	Sep 30, 2011
GSE20898	Genome-wide Analyses of Transcription Factor GATA3-Mediated Gene Regulation in Distinct T Cell Types	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Methylation profiling by high throughput sequencing	Mus musculus	53	BED BEDGRAPH RPKM SRA Run Selector	Brian J Abraham	Aug 26, 2011
GSE28254	Sequential ChIP-bisulfite sequencing enables direct genome-scale investigation of chromatin and DNA methylation cross-talk	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Methylation profiling by high throughput sequencing	Homo sapiens Mus musculus	15	BED WIG SRA Run Selector	Arjen Brinkman	Mar 27, 2012
GSE28532	Genome-wide Regulation of 5hmC, 5mC and Gene Expression by Tet1 Hydroxylase in Mouse Embryonic Stem Cells (ChIP-seq data)	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Methylation profiling by high throughput sequencing	Mus musculus	14	BED SRA Run Selector	Feizhen Wu	Apr 21, 2011
GSE29714	Comprehensive Analysis of mRNA Methylation Reveals Enrichment in 3' UTRs and Near Stop Codons	Expression profiling by high throughput sequencing Methylation profiling by high throughput sequencing	Homo sapiens Mus musculus	11	BW TXT SRA Run Selector	Christopher E Mason	May 17, 2012
GSE35005	Epigenetic dynamics of 5-hydroxymethylcytosine during mouse spermatogenesis	Expression profiling by high throughput sequencing Methylation profiling by high throughput sequencing	Mus musculus	18	BW SRA Run Selector	Chunsheng Han	Mar 12, 2012
GSE36114	Genome-wide analysis of histone modification, protein-DNA binding, cytosine methylation and transcriptome data in mouse and human ES cells and pig iPS cells	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Methylation profiling by high throughput sequencing	Homo sapiens Mus musculus Sus scrofa	47	BAM BED GTF TXT SRA Run Selector	Pengfei Yu	Feb 28, 2012
GSE38324	Chromatin context and ncRNA highlight physiological targets of MECP2 in brain.	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Methylation profiling by high throughput sequencing	Mus musculus	19	TXT SRA Run Selector	Assam El-Osta	May 30, 2015
GSE38604	The developmental patterning of 5-hydroxymethylcytosine during neuronal differentiation	Expression profiling by high throughput sequencing Methylation profiling by high throughput sequencing	Mus musculus	9	TXT WIG SRA Run Selector	Michael Brainard	Sep 03, 2013
GSE38983	Genome-wide analysis of mouse intestinal adenoma identifies early steps in the formation of cancer-specific DNA methylation patterns	Expression profiling by high throughput sequencing Methylation profiling by high throughput sequencing	Mus musculus	21	TXT SRA Run Selector	Lukas Chavez	Apr 03, 2013
GSE41545	Genome-wide profiling of 5-Formylcytosine reveals it roles in epigenetic priming	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Methylation profiling by high throughput sequencing	Mus musculus	30	BED TXT SRA Run Selector	Keith E Szulwach	Apr 18, 2013
GSE41658	Methylomic analysis identifies the involvement of migration and adhesion genes in the ageing of primary haematopoietic stem cells	Expression profiling by high throughput sequencing Methylation profiling by high throughput sequencing	Mus musculus	18	BW TXT SRA Run Selector	Gareth Wilson	Nov 01, 2013
GSE42629	Density and methylation state of CpG dinucleotides define histone variant specific retention of nucleosomes in mouse spermatozoa	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Methylation profiling by high throughput sequencing	Mus musculus	21	TAB WIG SRA Run Selector	Antoine Peters	Jun 15, 2013
GSE42880	MeCP2 binds to 5hmC enriched within active genes and accessible chromatin in the nervous system	Expression profiling by high throughput sequencing Methylation profiling by high throughput sequencing Other	Mus musculus	50	BEDGRAPH WIG SRA Run Selector	Marian Mellen	Jan 14, 2013
GSE42923	FGF Signaling Inhibition in ESCs Drives Rapid Genome-wide Demethylation to the Epigenetic Ground State of Pluripotency	Expression profiling by high throughput sequencing Methylation profiling by high throughput sequencing	Mus musculus	12	TXT SRA Run Selector	Felix Krueger	Jun 27, 2013
GSE42990	Tet1 plays an essential oncogenic role in MLL-rearranged leukemia	Expression profiling by high throughput sequencing Methylation profiling by high throughput sequencing	Mus musculus	9	BED TXT SRA Run Selector	Keith E Szulwach	Dec 14, 2015
GSE43617	Gene body 5-hydroxymethylcytosine facilitates transcription in olfactory neurons	Expression profiling by high throughput sequencing Methylation profiling by high throughput sequencing	Mus musculus	3	TXT WIG SRA Run Selector	Michael Brainard	Sep 03, 2013
GSE44359	High resolution transcriptome-wide RNA cytosine methylome of Mouse Embryonic Fibroblasts	Expression profiling by high throughput sequencing Methylation profiling by high throughput sequencing Non-coding RNA profiling by high throughput sequencing	Mus musculus	8	TXT SRA Run Selector	Vahid Khoddami	Apr 21, 2013
GSE44566	Genome-wide analysis identifies a functional association of Tet1 and Polycomb PRC2 in mouse embryonic stem cells but not in differentiated tissues	Expression profiling by high throughput sequencing Methylation profiling by high throughput sequencing	Mus musculus	8	BED BEDGRAPH SRA Run Selector	Francesco Neri	Aug 10, 2013
GSE44935	The Role of Tet1 During Somatic Cell Reprogramming	Expression profiling by high throughput sequencing Methylation profiling by high throughput sequencing	Mus musculus	7	BED TXT SRA Run Selector	Lihui Lin	Mar 08, 2013