GEO Browser - GEO

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39 series

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Accession	Title	Series type(s)	Organism(s)	Samples	Supplementary	Contact	Release date
Filter		Methylation profiling by high throughput sequencing	Mus musculus		MTX
GSE87064	The Dynamic Epigenetic Landscape of the Retina During Development, Reprogramming, and Tumorigenesis	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Methylation profiling by high throughput sequencing Other	Homo sapiens Mus musculus	868	BED BW MTX TSV TXT	Beisi Xu	May 03, 2017
GSE111839	Transcriptional and Epigenomic Landscapes of CNS and non-CNS Vascular Endothelial Cells	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Methylation profiling by high throughput sequencing	Mus musculus	42	BW MTX NARROWPEAK TAR TSV TXT SRA Run Selector	Mark F Sabbagh	Sep 06, 2018
GSE137337	Epigenetic regulator function through mouse gastrulation	Expression profiling by high throughput sequencing Methylation profiling by high throughput sequencing	Mus musculus	54	BW MTX TSV SRA Run Selector	Helene Kretzmer	Apr 07, 2020
GSE147490	mouse skin epithelial cells	Expression profiling by high throughput sequencing Methylation profiling by high throughput sequencing	Mus musculus	8	BIGWIG MTX TSV	Tom Samuel Carroll	Sep 04, 2020
GSE155677	Multimodal profiling of the transcriptional regulatory landscape of the developing mouse cortex identifies Neurog2 as a key epigenome remodeler	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Methylation profiling by high throughput sequencing Other	Escherichia coli Mus musculus	36	BED BEDGRAPH BW FA MTX PICKLE TAR TSV TXT SRA Run Selector	Boyan Bonev	Jan 27, 2022
GSE161676	Identifying non-genetic determinants of malignant clonal fitness at single cell resolution	Expression profiling by high throughput sequencing Methylation profiling by high throughput sequencing Other	Mus musculus synthetic construct	271	BED MTX SEG TSV VCF	Mark Dawson	Nov 08, 2021
GSE162724	germ cells	Expression profiling by high throughput sequencing Methylation profiling by high throughput sequencing Other	Mus musculus	50	BW MTX TSV TXT	teissandier aurelie	Jan 25, 2022
GSE165023	Sstr2 knockout mice	Expression profiling by high throughput sequencing Methylation profiling by high throughput sequencing	Homo sapiens Mus musculus	52	BIGWIG BW MTX TSV	Byoung-Ha Yoon	Jan 04, 2023
GSE168807	Dnmt3a-Mutant Hematopoietic Stem cells are resistant to inflammatory stress	Expression profiling by high throughput sequencing Methylation profiling by high throughput sequencing	Mus musculus	56	BED MTX TSV SRA Run Selector	Grant A Challen	Feb 22, 2022
GSE171127	Comparative parallel meta-analysis of cells undergoing reprogramming to pluripotency and trophectoderm states	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Genome variation profiling by high throughput sequencing Methylation profiling by high throughput sequencing	Mus musculus	184	BETA BIGWIG MTX TSV TXT SRA Run Selector	Tommy Kaplan	Apr 28, 2022
GSE178628	Hypoxia induces an early primitive streak signature, enhancing spontaneous elongation and lineage representation in gastruloids	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Methylation profiling by high throughput sequencing	Mus musculus	27	MTX NARROWPEAK TSV	Natalia Lopez-Anguita	Aug 24, 2022
GSE185005	Induction of mouse totipotent stem cells by a defined chemical cocktail	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Methylation profiling by high throughput sequencing	Mus musculus	18	BW MTX NARROWPEAK TSV	Pengcheng Tan	May 25, 2022
GSE188389	Antigen cross-presentation in young tumor-bearing hosts promotes CD8 T cell terminal differentiation	Expression profiling by high throughput sequencing Methylation profiling by high throughput sequencing	Homo sapiens Mus musculus	5	BED MTX TSV	yiping fan	Feb 28, 2022
GSE188834	Establish a rapid and efficient chemical reprogramming platform	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Methylation profiling by high throughput sequencing	Mus musculus	165	MTX TSV TXT	Yunkun Lu	May 03, 2023
GSE190371	Vitamin C deficiency causes cell type-specific epigenetic reprogramming and acute tubular necrosis	Expression profiling by high throughput sequencing Methylation profiling by high throughput sequencing	Mus musculus	16	BEDGRAPH MTX TSV TXT SRA Run Selector	Zihui Yu	Dec 09, 2021
GSE199885	Single substitution in H3.3G34 alters DNMT3A recruitment to cause progressive neurodegeneration	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Methylation profiling by high throughput sequencing	Mus musculus	62	BW MTX TSV	Claudia L Kleinman	Mar 16, 2023
GSE201665	Inhibition of mutant IDH1 promotes cycling of acute myeloid leukemia stem cells	Expression profiling by high throughput sequencing Methylation profiling by high throughput sequencing	Mus musculus	32	MTX TSV	Emily Gruber	Aug 17, 2022
GSE204908	Single-cell multi-omics profiling links dynamic DNA methylation to cell fate decisions during early mammalian organogenesis.	Expression profiling by high throughput sequencing Methylation profiling by high throughput sequencing	Mus musculus	2617	MTX TSV	Felix Krueger	Jul 19, 2022
GSE206387	YTHDF2 inhibition potentiates radiotherapy by reprogramming suppressive myeloid cells	Expression profiling by high throughput sequencing Methylation profiling by high throughput sequencing	Mus musculus	46	MTX NARROWPEAK TSV TXT	Xiaoyang Dou	Apr 28, 2023
GSE208742	Direct neuronal reprogramming of mouse astrocytes is associated with multiscale epigenome remodeling and requires Yy1	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Methylation profiling by high throughput sequencing Other	Mus musculus	64	BED BEDGRAPH BW MTX NARROWPEAK TAB TSV TXT XLSX SRA Run Selector	Boyan Bonev	Apr 30, 2024