GEO Browser - GEO

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23 series

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Accession	Title	Series type(s)	Organism(s)	Samples	Supplementary	Contact	Release date
Filter	Platform: GPL24247	Methylation profiling by high throughput sequencing	Mus musculus		NARROWPEAK
GSE208742	Direct neuronal reprogramming of mouse astrocytes is associated with multiscale epigenome remodeling and requires Yy1	Other Methylation profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Expression profiling by high throughput sequencing	Mus musculus	64	BED BEDGRAPH BW MTX NARROWPEAK TAB TSV TXT XLSX SRA Run Selector	Boyan Bonev	Apr 30, 2024
GSE211521	Global m6A-modified mRNAs in the uterus of wild-type mouse	Other Methylation profiling by high throughput sequencing	Mus musculus	2	NARROWPEAK	Ji-Long Liu	Nov 18, 2022
GSE247620	Histone methyltransferase SETDB1 silenced SINE B2 retrotransposons and maintained mitotic cell cycle of neural progenitor cells	Other Methylation profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	22	COV HIC NARROWPEAK	Yan Jiang	Jun 01, 2024
GSE157556	Insights into the regulation of the brain-placental axis	Non-coding RNA profiling by high throughput sequencing Methylation profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Expression profiling by high throughput sequencing	Mus musculus	42	COV NARROWPEAK	Susanta K. Behura	Aug 27, 2021
GSE131643	Tox reinforces the phenotype and longevity of exhausted T-cells in chronic viral infection	Methylation profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	64	BED NARROWPEAK TXT	yiping fan	Jul 03, 2019
GSE145878	p300 suppresses the transition of myelodysplastic syndrome to acute myeloid leukemia	Methylation profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Expression profiling by high throughput sequencing	Mus musculus	74	BIGWIG BW NARROWPEAK	Stephen Nimer	Nov 03, 2021
GSE168415	DNMT3B supports meso-endoderm differentiation from mouse embryonic stem cells	Methylation profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Expression profiling by high throughput sequencing	Mus musculus	1606	BW NARROWPEAK	Andrea Lauria	Jan 23, 2023
GSE168728	Mouse totipotent stem cells captured and maintained through spliceosomal repression	Methylation profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Expression profiling by high throughput sequencing	Mus musculus	50	COV CSV NARROWPEAK SRA Run Selector	Min Yang	May 15, 2021
GSE171998	Transcriptional reprogramming of skeletal muscle stem cells by the niche environment	Methylation profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Expression profiling by high throughput sequencing	Mus musculus	38	BIGWIG MAT NARROWPEAK TSV TXT	Vahab Soleimani	Mar 17, 2022
GSE178628	Hypoxia induces an early primitive streak signature, enhancing spontaneous elongation and lineage representation in gastruloids	Methylation profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Expression profiling by high throughput sequencing	Mus musculus	27	MTX NARROWPEAK TSV	Natalia Lopez-Anguita	Aug 24, 2022
GSE179880	Unveiling E2F4, TEAD1 and AP-1 as regulatory transcription factors of the replicative senescence program by multi-omics analysis	Methylation profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Expression profiling by high throughput sequencing	Mus musculus	75	COV NARROWPEAK TXT SRA Run Selector	Yi Zhang	Oct 01, 2021
GSE185005	Induction of mouse totipotent stem cells by a defined chemical cocktail	Methylation profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Expression profiling by high throughput sequencing	Mus musculus	18	BW MTX NARROWPEAK TSV	Pengcheng Tan	May 25, 2022
GSE198458	Modeling methyl-sensitive transcription factor motifs with an expanded epigenetic alphabet	Methylation profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	8	NARROWPEAK	Michael M. Hoffman	Aug 16, 2022
GSE206387	YTHDF2 inhibition potentiates radiotherapy by reprogramming suppressive myeloid cells	Methylation profiling by high throughput sequencing Expression profiling by high throughput sequencing	Mus musculus	46	MTX NARROWPEAK TSV TXT	Xiaoyang Dou	Apr 28, 2023
GSE212029	B16 and 4T1 cell lines with decitabine treatment	Methylation profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Expression profiling by high throughput sequencing	Mus musculus	36	BW NARROWPEAK	Eric Greer	Jun 30, 2024
GSE214845	Dual gene activating and repressive functions of TET1 in germ layer lineage bifurcation distinguished by genomic context and dependence on 5-methylcytosine oxidation	Methylation profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Expression profiling by high throughput sequencing	Mus musculus	150	BIGWIG BW MTX NARROWPEAK RDS TSV TXT	Bernard Klaas van der Veer	Apr 12, 2023
GSE228707	Bisulfite-free base-resolution sequencing of oxidized cytosines (APOBEC-seq) reveals a ubiquitous role of thymine DNA glycosylase in active gene promoters and an interaction with MBD3/NuRD	Methylation profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens Mus musculus	55	COV NARROWPEAK	Moshe Szyf	Jun 30, 2023
GSE236728	Synthetic essentiality of thymine DNA glycosylase in p53-deficient cancer	Methylation profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Expression profiling by high throughput sequencing	Homo sapiens Mus musculus	73	BEDGRAPH BW MTX NARROWPEAK TSV	Zhenyu Shao	Jun 19, 2024
GSE240413	Brain methylome remodeling sustains neuronal activity gene expression in mice exposed to maternal immune activation [5mC]	Methylation profiling by high throughput sequencing	Mus musculus	16	NARROWPEAK	Bing Yao	Oct 25, 2023
GSE240415	Brain methylome remodeling sustains neuronal activity gene expression in mice exposed to maternal immune activation [5hmc]	Methylation profiling by high throughput sequencing	Mus musculus	16	NARROWPEAK	Bing Yao	Oct 25, 2023