GEO Browser - GEO

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298 series

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Accession	Title	Series type(s)	Organism(s)	Samples	Supplementary	Contact	Release date
Filter	Platform: GPL19057	Methylation profiling by high throughput sequencing	Mus musculus
GSE80973	Single-cell 5hmC sequencing reveals chromosome-wide cell-to-cell variability and enables lineage reconstruction	Methylation profiling by high throughput sequencing	synthetic construct Mus musculus	10	TXT SRA Run Selector	Siddharth Subhas Dey	May 03, 2016
GSE109262	Joint profiling of chromatin accessibility, DNA methylation and transcription in single cells	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Methylation profiling by high throughput sequencing	synthetic construct Mus musculus	244	TSV TXT SRA Run Selector	Felix Krueger	Jan 17, 2018
GSE161676	Identifying non-genetic determinants of malignant clonal fitness at single cell resolution	Expression profiling by high throughput sequencing Other Methylation profiling by high throughput sequencing	synthetic construct Mus musculus	271	BED MTX SEG TSV VCF	Mark Dawson	Nov 08, 2021
GSE165675	DNA methylation profile in animal models of neurodevelopmental disorders treated with TAK-418	Methylation profiling by high throughput sequencing	Rattus norvegicus Mus musculus	18	BED SRA Run Selector	Satoru Matsuda	Jan 29, 2021
GSE165676	Animal models of neurodevelopmental disorders treated with TAK-418	Genome binding/occupancy profiling by high throughput sequencing Expression profiling by high throughput sequencing Methylation profiling by high throughput sequencing	Rattus norvegicus Mus musculus	119	BED	Satoru Matsuda	Jan 29, 2021
GSE226502	Epigenetic evolution of the Ly49 gene family	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Methylation profiling by high throughput sequencing Other	Rattus norvegicus Mus musculus	65	BEDGRAPH BW CSV FA HIC TXT	Changxu Fan	Apr 20, 2024
GSE60605	An alternative pluripotent state confers interspecies chimaeric competency	Expression profiling by array Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Methylation profiling by high throughput sequencing	Pan troglodytes Mus musculus Macaca mulatta Homo sapiens	42	BIGWIG CEL TSV	Christopher Benner	May 06, 2015
GSE58108	Rlf, a widely-spaced zinc finger protein, is involved in maintaining epigenetic marks at CpG island shores and enhancer elements across the genome	Methylation profiling by high throughput sequencing Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	22	BW TAB SRA Run Selector	Harald Oey	Mar 24, 2015
GSE62631	Single-base resolution analysis of active DNA demethylation using methylase-assisted bisulfite sequencing	Methylation profiling by high throughput sequencing	Mus musculus	16	BEDGRAPH TXT SRA Run Selector	Hao Wu	Nov 02, 2014
GSE66847	Dynamics of 5-hmC in cardiac maturation and hypertrophy	Expression profiling by high throughput sequencing Methylation profiling by high throughput sequencing	Mus musculus	34	BED BW	Paolo Kunderfranco	Jun 21, 2016
GSE69101	Comprehensive Epigenomic Analysis Reveals Dynamic Regulatory Programs Of Blood Development	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Methylation profiling by high throughput sequencing	Mus musculus	77	BED BW	MS Vijayabaskar	Feb 25, 2016
GSE72432	Brain neuronal cell nuclei with exceptionally high levels of hydroxymethylcytosine	Methylation profiling by high throughput sequencing	Mus musculus	3	TSV SRA Run Selector	Robert J Schmitz	Jul 07, 2022
GSE72856	Intragenic DNA methylation prevents cryptic transcription initiations on gene bodies	Methylation profiling by high throughput sequencing Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	78	BED BEDGRAPH	Francesco Neri	Feb 25, 2017
GSE72860	Binding of 14-3-3 reader proteins to phosphorylated DNMT1 facilitates aberrant DNA methylation and gene expression	Methylation profiling by high throughput sequencing Expression profiling by high throughput sequencing	Mus musculus	8	TXT SRA Run Selector	Guoqiang Zhang	Sep 10, 2015
GSE73014	Genome-wide DNA-methylation and transcriptome change due to lncRNA H19 knockdown in myotubes	Expression profiling by high throughput sequencing Methylation profiling by high throughput sequencing	Mus musculus	8	BED	Na Zhang	Nov 09, 2015
GSE75323	Genetic and Epigenetic Variation, but Not Diet, Shape the Sperm Methylome	Methylation profiling by high throughput sequencing	Mus musculus	16	SRA Run Selector	Alper Kucukural	Dec 17, 2015
GSE75395	Omics analyses of B3 pre-B cell line from STATegra Project	Genome binding/occupancy profiling by high throughput sequencing Methylation profiling by high throughput sequencing Non-coding RNA profiling by high throughput sequencing Expression profiling by high throughput sequencing	Mus musculus	144		Ana Conesa	Feb 28, 2017
GSE75426	Local compartment changes and regulatory landscape alterations in histone H1-depleted cells	Genome binding/occupancy profiling by high throughput sequencing Expression profiling by high throughput sequencing Methylation profiling by high throughput sequencing	Mus musculus	41	BED TXT SRA Run Selector	Geert Geeven	Nov 30, 2015
GSE81222	Erasure of Tet-oxidized 5-methylcytosine by a SRAP nuclease	Genome binding/occupancy profiling by high throughput sequencing Methylation profiling by high throughput sequencing Expression profiling by high throughput sequencing	Mus musculus	31	BED BEDGRAPH BIGWIG TXT WIG SRA Run Selector	Douglas Edmund Feldman	Oct 10, 2017
GSE83422	Methyl-seq and ChIP-seq analyses of TSPAN8-high and TSPAN8-low subpopulations of ID4-EGFP+ undifferentiated spermatogonia	Genome binding/occupancy profiling by high throughput sequencing Methylation profiling by high throughput sequencing	Mus musculus	10	TXT XLSX SRA Run Selector	Brian P. Hermann	Apr 24, 2017