GEO Browser - GEO

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111 series

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Accession	Title	Series type(s)	Organism(s)	Samples	Supplementary	Contact	Release date
Filter	Platform: GPL19057	Methylation profiling by high throughput sequencing	Mus musculus		TXT
GSE80973	Single-cell 5hmC sequencing reveals chromosome-wide cell-to-cell variability and enables lineage reconstruction	Methylation profiling by high throughput sequencing	synthetic construct Mus musculus	10	TXT SRA Run Selector	Siddharth Subhas Dey	May 03, 2016
GSE109262	Joint profiling of chromatin accessibility, DNA methylation and transcription in single cells	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Methylation profiling by high throughput sequencing	synthetic construct Mus musculus	244	TSV TXT SRA Run Selector	Felix Krueger	Jan 17, 2018
GSE226502	Epigenetic evolution of the Ly49 gene family	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Methylation profiling by high throughput sequencing Other	Rattus norvegicus Mus musculus	65	BEDGRAPH BW CSV FA HIC TXT	Changxu Fan	Apr 20, 2024
GSE62631	Single-base resolution analysis of active DNA demethylation using methylase-assisted bisulfite sequencing	Methylation profiling by high throughput sequencing	Mus musculus	16	BEDGRAPH TXT SRA Run Selector	Hao Wu	Nov 02, 2014
GSE72860	Binding of 14-3-3 reader proteins to phosphorylated DNMT1 facilitates aberrant DNA methylation and gene expression	Methylation profiling by high throughput sequencing Expression profiling by high throughput sequencing	Mus musculus	8	TXT SRA Run Selector	Guoqiang Zhang	Sep 10, 2015
GSE75426	Local compartment changes and regulatory landscape alterations in histone H1-depleted cells	Genome binding/occupancy profiling by high throughput sequencing Expression profiling by high throughput sequencing Methylation profiling by high throughput sequencing	Mus musculus	41	BED TXT SRA Run Selector	Geert Geeven	Nov 30, 2015
GSE81222	Erasure of Tet-oxidized 5-methylcytosine by a SRAP nuclease	Genome binding/occupancy profiling by high throughput sequencing Methylation profiling by high throughput sequencing Expression profiling by high throughput sequencing	Mus musculus	31	BED BEDGRAPH BIGWIG TXT WIG SRA Run Selector	Douglas Edmund Feldman	Oct 10, 2017
GSE83422	Methyl-seq and ChIP-seq analyses of TSPAN8-high and TSPAN8-low subpopulations of ID4-EGFP+ undifferentiated spermatogonia	Genome binding/occupancy profiling by high throughput sequencing Methylation profiling by high throughput sequencing	Mus musculus	10	TXT XLSX SRA Run Selector	Brian P. Hermann	Apr 24, 2017
GSE84164	Derivation of ground-state female ESCs maintaining gamete-derived DNA methylation	Methylation profiling by high throughput sequencing Expression profiling by high throughput sequencing	Mus musculus	88	BEDGRAPH TXT SRA Run Selector	Yasuhiro Yamada	Jul 27, 2017
GSE84373	Vitamin C and L-Proline antagonistic effects capture alternative states in the pluripotency continuum	Expression profiling by high throughput sequencing Methylation profiling by high throughput sequencing	Mus musculus	22	BED TXT	Cristina D'Aniello	Feb 03, 2017
GSE85251	Postnatal DNA demethylation and its role in tissue maturation	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Methylation profiling by high throughput sequencing	Mus musculus	131	BED TXT SRA Run Selector	Klaus H Kaestner	May 09, 2018
GSE86907	A novel requirement for Drosha in maintenance of mammalian CG methylation	Methylation profiling by high throughput sequencing Expression profiling by high throughput sequencing	Mus musculus	12	TSV TXT SRA Run Selector	Robert J Schmitz	Jul 27, 2017
GSE87097	High concordance between Illumina HiSeq2500 and NextSeq500 for Reduced Representation Bisulfite Sequencing (RRBS)	Methylation profiling by high throughput sequencing	Mus musculus	2	TXT SRA Run Selector	Andrew Keniry	Feb 09, 2017
GSE87623	Vitamin C induced epigenomic remodeling in IDH1 mutant acute myeloid leukemia	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Methylation profiling by high throughput sequencing	Mus musculus	24	BED TXT WIG SRA Run Selector	Martin Hirst	Jul 01, 2017
GSE89275	Diverse interventions that extend mouse lifespan suppress shared age-associated epigenetic changes at critical gene regulatory regions	Expression profiling by high throughput sequencing Methylation profiling by high throughput sequencing	Mus musculus	48	TXT	Neil A Robertson	Feb 16, 2017
GSE95720	Individual retrotransposon integrants are differentially controlled by KZFP/KAP1-dependent histone methylation, DNA methylation and TET-mediated hydroxymethylation in naïve embryonic stem cells	Genome binding/occupancy profiling by high throughput sequencing Expression profiling by high throughput sequencing Methylation profiling by high throughput sequencing	Mus musculus	28	BED PILEUP TXT SRA Run Selector	Julien Duc	Feb 28, 2018
GSE98256	Rif1 Promotes a Repressive Chromatin State to Safeguard Against Endogenous Retrovirus Activation	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Methylation profiling by high throughput sequencing	Mus musculus	22	BEDGRAPH TXT	Pishun Li	Sep 19, 2017
GSE99607	Impaired DNA demethylation of C/EBP sites causes premature aging	Methylation profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Expression profiling by high throughput sequencing Expression profiling by array Other	Mus musculus	58	BW TAR TSV TXT	Emil Karaulanov	Jun 11, 2018
GSE101610	Transcriptional and epigenetic profiling of aged mouse SVZ-derived neural stem / progenitor cells	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Methylation profiling by high throughput sequencing	Mus musculus	38	TXT SRA Run Selector	Felix Krueger	Mar 06, 2018
GSE102518	High-Resolution Dissection of Conducive Somatic Cell Reprogramming to Naïve Ground State Pluripotency in Mbd3/NuRD and Gatad2a/NuRD Depleted Systems	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Methylation profiling by high throughput sequencing Non-coding RNA profiling by high throughput sequencing	Mus musculus	243	BED TAB TXT	Noa Novershtern	Jul 15, 2018