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136 series

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Accession	Title	Series type(s)	Organism(s)	Samples	Supplementary	Contact	Release date
Filter	Platform: GPL19057	Methylation profiling by high throughput sequencing	Mus musculus		SRA Run Selector
GSE112276	Transcriptome Mapping of Internal N7-methylguanosine Methylome in Mammalian mRNA	Methylation profiling by high throughput sequencing Other	Homo sapiens Mus musculus	104	BED FPKM_TRACKING TXT XLSX SRA Run Selector	Li-Sheng Zhang	Apr 26, 2019
GSE112554	Highly scalable generation of DNA methylation profiles in single cells	Methylation profiling by high throughput sequencing	Homo sapiens Mus musculus	6	BED SRA Run Selector	Ryan M Mulqueen	Apr 12, 2018
GSE121671	Tet inactivation disrupts YY1 binding and long-range chromatin interactions to cause developmental defects in embryonic heart	Methylation profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Expression profiling by high throughput sequencing Other	Homo sapiens Mus musculus	23	BW HIC TXT SRA Run Selector	Jia Li	Aug 07, 2019
GSE127247	Control of noncoding RNA production and histone levels by a 5’ tRNA fragment	Expression profiling by high throughput sequencing Methylation profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Other	Homo sapiens Mus musculus	48	BED XLSX SRA Run Selector	Mike Levine	Jan 17, 2020
GSE131678	A probabilistic framework for cellular lineage reconstruction using integrated single-cell 5-hydroxymethylcytosine and genomic DNA sequencing	Methylation profiling by high throughput sequencing	Homo sapiens Mus musculus	16	TXT SRA Run Selector	Siddharth Dey	Jul 08, 2021
GSE139984	Strand-specific single-cell methylomics reveals distinct modes of DNA demethylation dynamics in preimplantation mouse and human embryos	Methylation profiling by high throughput sequencing	Homo sapiens Mus musculus	62	TXT SRA Run Selector	Maya Sen	Feb 13, 2020
GSE149954	Extended representation bisulfite sequencing of gene regulatory elements in multiplexed samples and single cells	Methylation profiling by high throughput sequencing	Homo sapiens Mus musculus	118	TXT SRA Run Selector	Volker Hovestadt	Mar 29, 2021
GSE183934	Perturbation of TET2 condensation induces genome-wide promiscuous DNA hypomethylation and curtails leukemia cell growth	Methylation profiling by high throughput sequencing	Homo sapiens Mus musculus	50	BW HIC TXT SRA Run Selector	Jia Li	Jun 16, 2024
GSE186007	LABS: linear amplification-based bisulfite sequencing for ultrasensitive cancer detection from cell-free DNA	Methylation profiling by high throughput sequencing	Homo sapiens Mus musculus	106	COV SRA Run Selector	Xiaolong Cui	Apr 24, 2024
GSE103213	Early-life gene expression in neurons modulates lasting epigenetic states. [Bisulfite-seq]	Methylation profiling by high throughput sequencing	Lambdavirus lambda Mus musculus	34	TXT SRA Run Selector	Hume Stroud	Oct 19, 2017
GSE58108	Rlf, a widely-spaced zinc finger protein, is involved in maintaining epigenetic marks at CpG island shores and enhancer elements across the genome	Methylation profiling by high throughput sequencing Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	22	BW TAB SRA Run Selector	Harald Oey	Mar 24, 2015
GSE62631	Single-base resolution analysis of active DNA demethylation using methylase-assisted bisulfite sequencing	Methylation profiling by high throughput sequencing	Mus musculus	16	BEDGRAPH TXT SRA Run Selector	Hao Wu	Nov 02, 2014
GSE72432	Brain neuronal cell nuclei with exceptionally high levels of hydroxymethylcytosine	Methylation profiling by high throughput sequencing	Mus musculus	3	TSV SRA Run Selector	Robert J Schmitz	Jul 07, 2022
GSE72860	Binding of 14-3-3 reader proteins to phosphorylated DNMT1 facilitates aberrant DNA methylation and gene expression	Methylation profiling by high throughput sequencing Expression profiling by high throughput sequencing	Mus musculus	8	TXT SRA Run Selector	Guoqiang Zhang	Sep 10, 2015
GSE75323	Genetic and Epigenetic Variation, but Not Diet, Shape the Sperm Methylome	Methylation profiling by high throughput sequencing	Mus musculus	16	SRA Run Selector	Alper Kucukural	Dec 17, 2015
GSE75426	Local compartment changes and regulatory landscape alterations in histone H1-depleted cells	Genome binding/occupancy profiling by high throughput sequencing Expression profiling by high throughput sequencing Methylation profiling by high throughput sequencing	Mus musculus	41	BED TXT SRA Run Selector	Geert Geeven	Nov 30, 2015
GSE80973	Single-cell 5hmC sequencing reveals chromosome-wide cell-to-cell variability and enables lineage reconstruction	Methylation profiling by high throughput sequencing	Mus musculus synthetic construct	10	TXT SRA Run Selector	Siddharth Subhas Dey	May 03, 2016
GSE81222	Erasure of Tet-oxidized 5-methylcytosine by a SRAP nuclease	Genome binding/occupancy profiling by high throughput sequencing Methylation profiling by high throughput sequencing Expression profiling by high throughput sequencing	Mus musculus	31	BED BEDGRAPH BIGWIG TXT WIG SRA Run Selector	Douglas Edmund Feldman	Oct 10, 2017
GSE83422	Methyl-seq and ChIP-seq analyses of TSPAN8-high and TSPAN8-low subpopulations of ID4-EGFP+ undifferentiated spermatogonia	Genome binding/occupancy profiling by high throughput sequencing Methylation profiling by high throughput sequencing	Mus musculus	10	TXT XLSX SRA Run Selector	Brian P. Hermann	Apr 24, 2017
GSE84164	Derivation of ground-state female ESCs maintaining gamete-derived DNA methylation	Methylation profiling by high throughput sequencing Expression profiling by high throughput sequencing	Mus musculus	88	BEDGRAPH TXT SRA Run Selector	Yasuhiro Yamada	Jul 27, 2017