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64 series

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Accession	Title	Series type(s)	Organism(s)	Samples	Supplementary	Contact	Release date
Filter	Platform: GPL16417	Methylation profiling by high throughput sequencing	Mus musculus		TXT
GSE36114	Genome-wide analysis of histone modification, protein-DNA binding, cytosine methylation and transcriptome data in mouse and human ES cells and pig iPS cells	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Methylation profiling by high throughput sequencing	Homo sapiens Mus musculus Sus scrofa	47	BAM BED GTF TXT SRA Run Selector	Pengfei Yu	Feb 28, 2012
GSE38596	Genome-wide maps of cytosine methylation, cytosine hydroxylmethylation and small non coding RNAs in mouse ES cells and upon guided differentiation to mesoendoderm cells	Non-coding RNA profiling by high throughput sequencing Methylation profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	36	BAM BED GTF TXT SRA Run Selector	Pengfei Yu	Sep 22, 2012
GSE44935	The Role of Tet1 During Somatic Cell Reprogramming	Methylation profiling by high throughput sequencing Expression profiling by high throughput sequencing	Mus musculus	7	BED TXT SRA Run Selector	Lihui Lin	Mar 08, 2013
GSE85731	Epigenetic memory of obesity in mouse colonic epithelium	Expression profiling by high throughput sequencing Methylation profiling by high throughput sequencing	Mus musculus	45	BED BIGWIG TXT SRA Run Selector	Paul A Wade	Dec 19, 2017
GSE136650	Induction of autoreactive regulatory T cells through promiscuous gene expression by bone marrow-resident Aire+ antigen-presenting cells	Genome binding/occupancy profiling by high throughput sequencing Methylation profiling by high throughput sequencing	Mus musculus	33	BED BIGWIG TXT	Philipp Beckhove	Aug 26, 2022
GSE152174	Active turnover of genomic methylcytosine in pluripotent cells	Methylation profiling by high throughput sequencing	Mus musculus	4	BED TXT SRA Run Selector	Thomas Carell	Jun 11, 2020
GSE184490	Dynamic Runx1 chromatin boundaries affect gene expression in hematopoietic development	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Methylation profiling by high throughput sequencing Other	Mus musculus	132	BED BEDGRAPH TXT SRA Run Selector	Dominic Owens	Dec 16, 2021
GSE137098	Embryonic stem cell-derived neurons as a model system for epigenome maturation during development	Methylation profiling by high throughput sequencing Third-party reanalysis Expression profiling by high throughput sequencing	Mus musculus	53	BIGWIG GTF TXT SRA Run Selector	Ryan Lister	Jul 25, 2023
GSE163895	Roles of TET and TDG in DNA demethylation in proliferating and non-proliferating immune cells	Methylation profiling by high throughput sequencing Expression profiling by high throughput sequencing	Mus musculus	78	BIGWIG TXT	Atsushi Onodera	May 13, 2021
GSE60077	Length-dependent gene misregulation in Rett syndrome	Expression profiling by array Methylation profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Expression profiling by high throughput sequencing	Mus musculus	38	BW CEL TXT	Harrison Wren Gabel	Mar 12, 2015
GSE147568	A cis-acting mechanism mediates trancriptional memory at Polycomb target genes in mammals	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Methylation profiling by high throughput sequencing	Mus musculus	101	BW TXT	Daniel Holoch	Aug 19, 2021
GSE242067	Genome access is transcription factor specific and defined by nucleosome position	Genome binding/occupancy profiling by high throughput sequencing Methylation profiling by high throughput sequencing	Mus musculus	131	BW TAR TXT	Dirk Schuebeler	Aug 13, 2024
GSE75975	Genome-scale DNA methylation oscillations in pluripotent cells	Methylation profiling by high throughput sequencing Expression profiling by high throughput sequencing	Mus musculus	765	COV TXT	Felix Krueger	Jun 25, 2018
GSE148067	Systematic analysis of imprinting defects in female and male mouse iPSCs	Expression profiling by high throughput sequencing Methylation profiling by high throughput sequencing	Mus musculus	100	COV TXT SRA Run Selector	Felix Krueger	Jul 15, 2022
GSE226209	Durable and efficient gene silencing in vivo by hit-and-run epigenome editing	Expression profiling by high throughput sequencing Methylation profiling by high throughput sequencing Other	Mus musculus	121	COV TXT	Sara Valsoni	Dec 20, 2023
GSE172629	Heterogeneous phenotypes of Pten-null hepatocellular carcinoma in hepatitis B virus transgenic mice parallels liver lobule zonal gene expression patterns	Expression profiling by high throughput sequencing Methylation profiling by high throughput sequencing	Mus musculus	20	FA TXT SRA Run Selector	Mark Maienschein-Cline	Jan 05, 2022
GSE70317	Reporter Gene Silencing in Targeted Mouse Mutants is Associated with Promoter CpG Island Methylation	Methylation profiling by high throughput sequencing	Mus musculus	72	FASTA TXT SRA Run Selector	David B West	Jul 28, 2015
GSE242066	Genome access is transcription factor specific and defined by nucleosome position [NOMe-seq]	Methylation profiling by high throughput sequencing	Mus musculus	115	FASTA TAR TXT	Dirk Schuebeler	Aug 13, 2024
GSE169070	GwEEP - A comprehensive approach for the profiling of DNA modifying enzymes	Methylation profiling by high throughput sequencing	Mus musculus	12	IGV TXT SRA Run Selector	Jörn Walter	Mar 01, 2023
GSE144524	High throughput screening identifies SOX2 as a Super Pioneer Factor that inhibits DNA methylation maintenance at its binding sites	Expression profiling by high throughput sequencing Methylation profiling by high throughput sequencing	Mus musculus	24	TAB TXT SRA Run Selector	victor YTHIER	Mar 18, 2021