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64 series

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Accession	Title	Series type(s)	Organism(s)	Samples	Supplementary	Contact	Release date
Filter	Platform: GPL16417	Methylation profiling by high throughput sequencing	Mus musculus		TXT
GSE36114	Genome-wide analysis of histone modification, protein-DNA binding, cytosine methylation and transcriptome data in mouse and human ES cells and pig iPS cells	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Methylation profiling by high throughput sequencing	Homo sapiens Mus musculus Sus scrofa	47	BAM BED GTF TXT SRA Run Selector	Pengfei Yu	Feb 28, 2012
GSE38596	Genome-wide maps of cytosine methylation, cytosine hydroxylmethylation and small non coding RNAs in mouse ES cells and upon guided differentiation to mesoendoderm cells	Non-coding RNA profiling by high throughput sequencing Methylation profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	36	BAM BED GTF TXT SRA Run Selector	Pengfei Yu	Sep 22, 2012
GSE44935	The Role of Tet1 During Somatic Cell Reprogramming	Methylation profiling by high throughput sequencing Expression profiling by high throughput sequencing	Mus musculus	7	BED TXT SRA Run Selector	Lihui Lin	Mar 08, 2013
GSE51170	Identification of building principles of methylation states at CG rich regions by high-throughput editing of a mammalian genome	Methylation profiling by high throughput sequencing	Escherichia coli Mus musculus synthetic construct	19	TXT SRA Run Selector	Dirk Schuebeler	Sep 30, 2014
GSE60077	Length-dependent gene misregulation in Rett syndrome	Expression profiling by array Methylation profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Expression profiling by high throughput sequencing	Mus musculus	38	BW CEL TXT	Harrison Wren Gabel	Mar 12, 2015
GSE67292	Length-dependent gene misregulation in Rett syndrome (Bisulfite-Seq 2)	Methylation profiling by high throughput sequencing	Mus musculus	4	TXT SRA Run Selector	Harrison Wren Gabel	Mar 26, 2015
GSE70317	Reporter Gene Silencing in Targeted Mouse Mutants is Associated with Promoter CpG Island Methylation	Methylation profiling by high throughput sequencing	Mus musculus	72	FASTA TXT SRA Run Selector	David B West	Jul 28, 2015
GSE68574	A probabilistic generative model for quantification of DNA modifications enables analysis of demethylation pathways [mESCs]	Methylation profiling by high throughput sequencing	Mus musculus	12	TXT SRA Run Selector	Tarmo Äijö	Jan 01, 2016
GSE68575	A probabilistic generative model for quantification of DNA modifications enables analysis of demethylation pathways [T-cells]	Methylation profiling by high throughput sequencing	Mus musculus	18	TXT SRA Run Selector	Tarmo Äijö	Jan 01, 2016
GSE68576	A probabilistic generative model for quantification of DNA modifications enables analysis of demethylation pathways	Methylation profiling by high throughput sequencing	Mus musculus	30	TXT	Tarmo Äijö	Jan 01, 2016
GSE76483	Simultaneous profiling of transcriptome and DNA methylome from a single cell	Expression profiling by high throughput sequencing Methylation profiling by high throughput sequencing	Mus musculus	192	TXT SRA Run Selector	Qin An	Apr 12, 2016
GSE72608	Intergenerational consequences of gene-environment induced epigenetic dynamics at rDNA in the mouse (Bis-PCR)	Methylation profiling by high throughput sequencing	Mus musculus	78	TXT SRA Run Selector	Robert Lowe	Jul 08, 2016
GSE72610	Intergenerational consequences of gene-environment induced epigenetic dynamics at rDNA in the mouse	Expression profiling by high throughput sequencing Methylation profiling by high throughput sequencing	Mus musculus	137	TXT	Robert Lowe	Jul 08, 2016
GSE80105	Synergistic model of chromatin predicts Dnase-I accessibility	Genome binding/occupancy profiling by high throughput sequencing Methylation profiling by high throughput sequencing	Homo sapiens Mus musculus	8	TAR TSV TXT SRA Run Selector	David Gifford	Jul 20, 2016
GSE79895	Imprinted DNA methylation reconstituted at a non-imprinted locus	Methylation profiling by high throughput sequencing	Mus musculus	36	TXT SRA Run Selector	Paul Soloway	Sep 12, 2016
GSE87165	Sequencing analysis for 5hmC pull-down DNA	Methylation profiling by high throughput sequencing	Mus musculus	12	TXT SRA Run Selector	Mayumi Oda	Sep 22, 2016
GSE58129	Postnatal Development is Associated with Genome-scale Changes in DNA methylation in Mouse Liver	Methylation profiling by high throughput sequencing	Mus musculus	55	TXT SRA Run Selector	Matt Cannon	Feb 08, 2017
GSE79775	Postnatal Development is Associated with Genome-scale Changes in DNA Methylation in Mouse Liver	Methylation profiling by high throughput sequencing	Mus musculus	104	TXT SRA Run Selector	Matt Cannon	Feb 08, 2017
GSE89832	HEPATIC DEFICIENCY OF THE PIONEER TRANSCRIPTION FACTOR FOXA RESTRICTS HEPATITIS B VIRUS BIOSYNTHESIS BY THE DEVELOPMENTAL REGULATION OF VIRAL DNA METHYLATION	Methylation profiling by high throughput sequencing	Mus musculus	341	TXT SRA Run Selector	Mark Maienschein-Cline	Feb 16, 2017
GSE87747	An electrical pulse stimulation protocol to study acute epigenetic response to muscle cell contraction uncovers acute hydroxymethylation of the exercise-responsive gene Nr4a3 [Bisulfite-Seq]	Methylation profiling by high throughput sequencing	Mus musculus	36	TXT SRA Run Selector	Lars Roed Ingerslev	Feb 22, 2017