GEO Browser - GEO

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98 series

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Accession	Title	Series type(s)	Organism(s)	Samples	Supplementary	Contact	Release date
Filter	Platform: GPL16417	Methylation profiling by high throughput sequencing	Mus musculus
GSE36114	Genome-wide analysis of histone modification, protein-DNA binding, cytosine methylation and transcriptome data in mouse and human ES cells and pig iPS cells	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Methylation profiling by high throughput sequencing	Homo sapiens Mus musculus Sus scrofa	47	BAM BED GTF TXT SRA Run Selector	Pengfei Yu	Feb 28, 2012
GSE38596	Genome-wide maps of cytosine methylation, cytosine hydroxylmethylation and small non coding RNAs in mouse ES cells and upon guided differentiation to mesoendoderm cells	Non-coding RNA profiling by high throughput sequencing Methylation profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	36	BAM BED GTF TXT SRA Run Selector	Pengfei Yu	Sep 22, 2012
GSE44935	The Role of Tet1 During Somatic Cell Reprogramming	Methylation profiling by high throughput sequencing Expression profiling by high throughput sequencing	Mus musculus	7	BED TXT SRA Run Selector	Lihui Lin	Mar 08, 2013
GSE85731	Epigenetic memory of obesity in mouse colonic epithelium	Expression profiling by high throughput sequencing Methylation profiling by high throughput sequencing	Mus musculus	45	BED BIGWIG TXT SRA Run Selector	Paul A Wade	Dec 19, 2017
GSE109545	A novel role of Tet1/2 proteins in cell cycle progression of trophoblast stem cells	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Methylation profiling by high throughput sequencing	Mus musculus	15	BED COV CSV SRA Run Selector	Myriam Hemberger	May 02, 2018
GSE136650	Induction of autoreactive regulatory T cells through promiscuous gene expression by bone marrow-resident Aire+ antigen-presenting cells	Genome binding/occupancy profiling by high throughput sequencing Methylation profiling by high throughput sequencing	Mus musculus	33	BED BIGWIG TXT	Philipp Beckhove	Aug 26, 2022
GSE152174	Active turnover of genomic methylcytosine in pluripotent cells	Methylation profiling by high throughput sequencing	Mus musculus	4	BED TXT SRA Run Selector	Thomas Carell	Jun 11, 2020
GSE158460	Dnmt1 has global de novo methylation activity and is specifically targeted to transposable elements	Expression profiling by high throughput sequencing Methylation profiling by high throughput sequencing Other	Mus musculus	90	BED BW CSV XLSX SRA Run Selector	Helene Kretzmer	Jun 18, 2021
GSE184490	Dynamic Runx1 chromatin boundaries affect gene expression in hematopoietic development	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Methylation profiling by high throughput sequencing Other	Mus musculus	132	BED BEDGRAPH TXT SRA Run Selector	Dominic Owens	Dec 16, 2021
GSE225372	Distinct disease mutations in DNMT3A result in a spectrum of behavioral, epigenetic, and transcriptional disruptions	Methylation profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Expression profiling by high throughput sequencing	Mus musculus	100	BED CSV XLSX	Diana Christian Beard	Nov 08, 2023
GSE137098	Embryonic stem cell-derived neurons as a model system for epigenome maturation during development	Methylation profiling by high throughput sequencing Third-party reanalysis Expression profiling by high throughput sequencing	Mus musculus	53	BIGWIG GTF TXT SRA Run Selector	Ryan Lister	Jul 25, 2023
GSE163895	Roles of TET and TDG in DNA demethylation in proliferating and non-proliferating immune cells	Methylation profiling by high throughput sequencing Expression profiling by high throughput sequencing	Mus musculus	78	BIGWIG TXT	Atsushi Onodera	May 13, 2021
GSE60077	Length-dependent gene misregulation in Rett syndrome	Expression profiling by array Methylation profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Expression profiling by high throughput sequencing	Mus musculus	38	BW CEL TXT	Harrison Wren Gabel	Mar 12, 2015
GSE102449	DNA methylation profiling by MBD-Seq in the mouse seminal vesicles (SVs) and uterus (U) following neonatal DES exposure	Methylation profiling by high throughput sequencing	Mus musculus	10	BW SRA Run Selector	Yin Li	Mar 27, 2018
GSE102450	Gene expression and DNA methylation profiling in the seminal vesicles (SVs) from neonatal DES-treated mice	Expression profiling by array Expression profiling by high throughput sequencing Methylation profiling by high throughput sequencing	Mus musculus	46	BW CEL CHP	Yin Li	Mar 27, 2018
GSE116208	TET enzymes augment AID expression via 5hmC modifications at the Aicda superenhancer	Methylation profiling by high throughput sequencing Other Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	83	BW	Anjana Rao	Apr 29, 2019
GSE147568	A cis-acting mechanism mediates trancriptional memory at Polycomb target genes in mammals	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Methylation profiling by high throughput sequencing	Mus musculus	101	BW TXT	Daniel Holoch	Aug 19, 2021
GSE242067	Genome access is transcription factor specific and defined by nucleosome position	Genome binding/occupancy profiling by high throughput sequencing Methylation profiling by high throughput sequencing	Mus musculus	131	BW TAR TXT	Dirk Schuebeler	Aug 13, 2024
GSE75975	Genome-scale DNA methylation oscillations in pluripotent cells	Methylation profiling by high throughput sequencing Expression profiling by high throughput sequencing	Mus musculus	765	COV TXT	Felix Krueger	Jun 25, 2018
GSE116163	DNA methylation oscillations at CpG poor enhancers in primed embryonic stem cells [amplicon-Seq]	Methylation profiling by high throughput sequencing	Mus musculus	96	COV SRA Run Selector	Felix Krueger	Jun 26, 2018