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323 series

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Accession	Title	Series type(s)	Organism(s)	Samples	Supplementary	Contact	Release date
Filter		Methylation profiling by high throughput sequencing			WIG
GSE120401	DNA methylome of pineapple	Expression profiling by high throughput sequencing Methylation profiling by high throughput sequencing	Ananas comosus	8	TXT WIG SRA Run Selector	Haifeng Wang	Sep 27, 2018
GSE33071	Whole genome bisulfite sequencing of idm1, rdd, ros1 mutants and Col-0 WT	Methylation profiling by high throughput sequencing	Arabidopsis thaliana	8	WIG SRA Run Selector	Jian-Kang Zhu	Jun 17, 2012
GSE37644	MORC family ATPases required for heterochromatin condensation and gene silencing	Non-coding RNA profiling by high throughput sequencing Expression profiling by high throughput sequencing Methylation profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Arabidopsis thaliana	26	TXT WIG SRA Run Selector	Shawn J. Cokus	May 03, 2012
GSE39247	The DDR complex facilitates the genome-wide association of RNA Polymerase V to promoters and evolutionarily young transposons	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Methylation profiling by high throughput sequencing	Arabidopsis thaliana	11	WIG SRA Run Selector	Christopher Joel Hale	Aug 05, 2012
GSE39901	Comprehensive analysis of silencing mutants reveals complex regulation of the Arabidopsis methylome.	Methylation profiling by high throughput sequencing Expression profiling by high throughput sequencing	Arabidopsis thaliana	92	WIG SRA Run Selector	Hume Stroud	Jan 11, 2013
GSE44209	DTF1 is a core component of RNA-directed DNA methylation and may assist in the recruitment of Pol IV	Methylation profiling by high throughput sequencing Non-coding RNA profiling by high throughput sequencing	Arabidopsis thaliana	8	WIG SRA Run Selector	Heng Zhang	Jun 03, 2013
GSE44417	Whole genome bisulfite sequencing of rdm16ros1, ros1, nrpd1ros1 mutants and C24 wild-type	Methylation profiling by high throughput sequencing	Arabidopsis thaliana	4	WIG SRA Run Selector	Jian-Kang Zhu	Sep 27, 2013
GSE45368	Polymerase-IV occupancy at RNA-directed DNA methylation sites requires SHH1	Non-coding RNA profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Methylation profiling by high throughput sequencing	Arabidopsis thaliana	28	WIG SRA Run Selector	Christopher Joel Hale	May 13, 2013
GSE48026	mRNA-Seq of asi1-1, wild-type and MethlyC-Seq of asi1-1	Expression profiling by high throughput sequencing Methylation profiling by high throughput sequencing	Arabidopsis thaliana	3	BEDGRAPH WIG SRA Run Selector	Jian-Kang Zhu	Sep 06, 2013
GSE48053	MethlyC-Seq of ibm1-4	Methylation profiling by high throughput sequencing	Arabidopsis thaliana	1	WIG SRA Run Selector	Jian-Kang Zhu	Sep 06, 2013
GSE49090	Interplay Between Active Chromatin Marks and RNA-directed DNA Methylation in Arabidopsis thaliana	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Non-coding RNA profiling by high throughput sequencing Methylation profiling by high throughput sequencing	Arabidopsis thaliana	34	WIG SRA Run Selector	Christopher Joel Hale	Nov 01, 2013
GSE49421	MethylC-Seq of idm2 single mutant and idm1idm2 double mutant	Methylation profiling by high throughput sequencing	Arabidopsis thaliana	3	WIG SRA Run Selector	Jian-Kang Zhu	Jul 10, 2014
GSE50486	rrp6l1-2 project	Expression profiling by high throughput sequencing Methylation profiling by high throughput sequencing Non-coding RNA profiling by high throughput sequencing	Arabidopsis thaliana	5	BEDGRAPH WIG SRA Run Selector	Jian-Kang Zhu	Apr 16, 2014
GSE50942	The Histone Variant H2A.W Defines Heterochromatin and Promotes Chromatin Condensation in Arabidopsis	Genome binding/occupancy profiling by high throughput sequencing Methylation profiling by high throughput sequencing Expression profiling by high throughput sequencing	Arabidopsis thaliana	10	TXT WIG SRA Run Selector	Hume Stroud	Jul 05, 2014
GSE51304	Non-CG methylation patterns shape the epigenetic landscape in Arabidopsis	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Methylation profiling by high throughput sequencing Non-coding RNA profiling by high throughput sequencing	Arabidopsis thaliana	48	TXT WIG SRA Run Selector	Hume Stroud	Dec 15, 2013
GSE51762	Arabidopsis EDM2 Promotes IBM1 Distal Polyadenylation and Regulates Genome DNA Methylation Patterns [BS-Seq]	Methylation profiling by high throughput sequencing	Arabidopsis thaliana	2	WIG SRA Run Selector	Lan Yang	Oct 29, 2013
GSE51764	Arabidopsis EDM2 Promotes IBM1 Distal Polyadenylation and Regulates Genome DNA Methylation Pattern	Methylation profiling by high throughput sequencing Expression profiling by high throughput sequencing	Arabidopsis thaliana	4	BEDGRAPH WIG	Lan Yang	Oct 29, 2013
GSE52041	SRA/SET domain-containing proteins link RNA polymerase V occupancy to DNA methylation	Non-coding RNA profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Methylation profiling by high throughput sequencing	Arabidopsis thaliana	18	WIG SRA Run Selector	Christopher Joel Hale	Jan 01, 2014
GSE52983	MethylC-Seq of Ws background wild-type (WT), ape1l-1 (Ws background), arp-1 (Col-0 background) and zdp-1 (Col-0 background) mutants	Methylation profiling by high throughput sequencing	Arabidopsis thaliana	4	WIG SRA Run Selector	Jian-Kang Zhu	Nov 21, 2014
GSE53033	MethlyC-Seq of Col-0 background wild-type (WT)	Methylation profiling by high throughput sequencing	Arabidopsis thaliana	1	WIG SRA Run Selector	Jian-Kang Zhu	Feb 05, 2015