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323 series

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Accession	Title	Series type(s)	Organism(s)	Samples	Supplementary	Contact	Release date
Filter		Methylation profiling by high throughput sequencing			WIG
GSE16256	UCSD Human Reference Epigenome Mapping Project	Genome binding/occupancy profiling by high throughput sequencing Methylation profiling by high throughput sequencing Expression profiling by high throughput sequencing Non-coding RNA profiling by high throughput sequencing	Homo sapiens	878	BAM BED WIG SRA Run Selector	UCSD AND SALK	Aug 03, 2009
GSE16368	UCSF-UBC Human Reference Epigenome Mapping Project	Genome binding/occupancy profiling by high throughput sequencing Non-coding RNA profiling by high throughput sequencing Expression profiling by high throughput sequencing Methylation profiling by high throughput sequencing	Homo sapiens	529	BAM BED TAB WIG SRA Run Selector	UCSF-UBC CENTER	Aug 03, 2009
GSE19889	Repressive and active histone methylation mark distinct promoters in human and mouse spermatozoa (Illumina)	Methylation profiling by high throughput sequencing	Homo sapiens	7	WIG SRA Run Selector	Antoine Peters	May 16, 2010
GSE19892	Repressive and active histone methylation mark distinct promoters in human and mouse spermatozoa	Methylation profiling by high throughput sequencing Genome binding/occupancy profiling by genome tiling array	Homo sapiens	13	PAIR WIG	Antoine Peters	May 16, 2010
GSE22376	Phyloepigenetic comparison of apes	Methylation profiling by high throughput sequencing	Homo sapiens Pan troglodytes Pongo pygmaeus	11	TXT WIG SRA Run Selector	Dario Boffelli	Sep 09, 2011
GSE25246	BI Human Reference Epigenome Mapping Project: Characterization of DNA methylation by RRBS	Methylation profiling by high throughput sequencing	Homo sapiens	10	WIG SRA Run Selector	BROAD INSTITUTE	Nov 11, 2010
GSE25247	BI Human Reference Epigenome Mapping Project: Characterization of DNA methylation by RRBS in human subject	Methylation profiling by high throughput sequencing	Homo sapiens	55	WIG SRA Run Selector	BROAD INSTITUTE	Nov 11, 2010
GSE25248	BI Human Reference Epigenome Mapping Project: Characterization of DNA methylation by RRBS in HUES lines	Methylation profiling by high throughput sequencing	Homo sapiens	11	WIG SRA Run Selector	BROAD INSTITUTE	Nov 11, 2010
GSE26100	Widespread targeted chromatin remodeling during the initial phase of somatic cell reprogramming	Expression profiling by array Methylation profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	36	CEL TXT WIG	Richard Koche	Jan 03, 2011
GSE28254	Sequential ChIP-bisulfite sequencing enables direct genome-scale investigation of chromatin and DNA methylation cross-talk	Genome binding/occupancy profiling by high throughput sequencing Methylation profiling by high throughput sequencing Expression profiling by high throughput sequencing	Homo sapiens Mus musculus	15	BED WIG SRA Run Selector	Arjen Brinkman	Mar 27, 2012
GSE28314	Genome-wide study of DNA methylation in AML by MeDIP-seq	Methylation profiling by high throughput sequencing	Homo sapiens	16	GFF TXT WIG SRA Run Selector	Jacek Dariusz Marzec	Apr 02, 2012
GSE30206	DNA binding factors shape the mouse methylome at distal regulatory regions.	Methylation profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Genome binding/occupancy profiling by array Expression profiling by high throughput sequencing	Mus musculus	23	PAIR WIG	Dirk Schuebeler	Dec 09, 2011
GSE30344	An atlas of DNA methylomes in pig adipose and muscle tissues	Methylation profiling by high throughput sequencing	Sus scrofa	180	WIG SRA Run Selector	Mingzhou Li	May 16, 2012
GSE30558	Bisulphite-sequencing of chromatin immunoprecipitated DNA (BisChiP-seq) directly informs methylation status	Genome binding/occupancy profiling by high throughput sequencing Methylation profiling by high throughput sequencing	Homo sapiens	2	BAM BED CSV WIG SRA Run Selector	Mark Robinson	Jan 18, 2012
GSE30902	Splicing enhances recruitment of methyltransferase HYPB/Setd2 and methylation of histone H3 lysine 36	Genome binding/occupancy profiling by high throughput sequencing Methylation profiling by high throughput sequencing	Homo sapiens	4	BED WIG SRA Run Selector	Romain Fenouil	Jul 25, 2011
GSE31204	Epigenetic remodeling and deregulation of SAPAP4/DLGAP4 is linked with early-onset cerebellar ataxia	Methylation profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens	15	BED BEDGRAPH WIG SRA Run Selector	Sheroy Minocherhomji	Jul 01, 2014
GSE31353	Methylation map of 8 neuroblastoma cell lines: NGS after MBD2-capture	Methylation profiling by high throughput sequencing	Homo sapiens	8	BED WIG SRA Run Selector	Maté Ongenaert	Sep 13, 2012
GSE31355	A genome wide methylation map of neuroblastoma cell lines	Methylation profiling by high throughput sequencing Expression profiling by array	Homo sapiens	24	BED CEL WIG	Maté Ongenaert	Sep 13, 2012
GSE32260	Relationship between DNMT1-RNA interactions, DNA methylation and gene expression	Expression profiling by array Expression profiling by high throughput sequencing Methylation profiling by high throughput sequencing	Homo sapiens	8	BSP CEL GTF WIG	Touati Benoukraf	Dec 01, 2012
GSE32399	Regions of Focal DNA Hypermethylation and Long-Range Hypomethylation in Colorectal Cancer Coincide with Nuclear Lamina-Associated Domains	Methylation profiling by high throughput sequencing	Homo sapiens	2	GTF TXT WIG SRA Run Selector	Benjamin Berman	Sep 27, 2011