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2574 series

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Accession	Title	Series type(s)	Organism(s)	Samples	Supplementary	Contact	Release date
Filter		Methylation profiling by high throughput sequencing			TXT
GSE10877	Highly integrated single base resolution maps of the epigenome in Arabidopsis	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by genome tiling array Methylation profiling by array Methylation profiling by high throughput sequencing	Arabidopsis thaliana	16	CEL TXT	Joseph R Ecker	Apr 21, 2008
GSE10966	Highly integrated epigenome maps in Arabidopsis - whole genome shotgun bisulfite sequencing	Methylation profiling by high throughput sequencing	Arabidopsis thaliana	4	TXT SRA Run Selector	Joseph R Ecker	Apr 21, 2008
GSE11034	Genome-scale DNA methylation maps of pluripotent and differentiated cells	Methylation profiling by high throughput sequencing	Mus musculus	18	TXT SRA Run Selector	Tarjei S Mikkelsen	Jul 06, 2008
GSE14966	Distinct DNA methylation patterns characterize differentiated human embryonic stem cells and developing human fetal liver	Expression profiling by array Methylation profiling by high throughput sequencing	Homo sapiens	32	TXT	Rami Rauch	Mar 06, 2009
GSE15007	Digital DNA methylation analysis of stem cell reprogramming by targeted bisulfite sequencing	Methylation profiling by high throughput sequencing	Homo sapiens	12	BED TXT	Kun Zhang	Apr 27, 2009
GSE15286	Epigenetic modifications and their relationships to smRNA and mRNA transcriptomes in maize	Genome binding/occupancy profiling by high throughput sequencing Non-coding RNA profiling by high throughput sequencing Expression profiling by high throughput sequencing Methylation profiling by high throughput sequencing	Zea mays	14	BED FA TXT SRA Run Selector	Xiangfeng Wang	Apr 28, 2009
GSE14570	Extensive demethylation of repetitive elements during seed development underlies gene imprinting	Methylation profiling by genome tiling array Methylation profiling by high throughput sequencing	Arabidopsis thaliana	10	BEDGRAPH GFF PAIR TXT SRA Run Selector	Jorja Henikoff	Jun 12, 2009
GSE15922	Genome-wide demethylation of Arabidopsis endosperm	Methylation profiling by high throughput sequencing	Arabidopsis thaliana	4	GFF TXT SRA Run Selector	Toshiro Nishimura	Jun 16, 2009
GSE17001	High definition profiling of mammalian DNA methylation by array capture and single molecule bisulfite sequencing	Methylation profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens	4	BED TXT SRA Run Selector	Emily Hodges	Jul 08, 2009
GSE17642	Genome-wide mapping of Eset-binding sites and H3K9me3 state in mouse embryonic stem cells	Genome binding/occupancy profiling by high throughput sequencing Methylation profiling by high throughput sequencing	Mus musculus	3	BED TXT SRA Run Selector	Mikael Huss	Nov 04, 2009
GSE19418	Dynamic Changes in the Human Methylome During Differentiation	Methylation profiling by high throughput sequencing	Homo sapiens	3	TXT SRA Run Selector	Chia-Lin Wei	Dec 29, 2009
GSE19960	Genome-wide erasure of DNA methylation in mouse primordial germ cells is affected by Aid deficiency	Methylation profiling by high throughput sequencing	Mus musculus	12	TXT SRA Run Selector	matteo Pellegrini	Jan 26, 2010
GSE21167	Examination of whole genome DNA methylation status of two chicken breeds	Methylation profiling by high throughput sequencing	Gallus gallus	4	TXT SRA Run Selector	qinghe li	Apr 02, 2010
GSE21170	Genome-wide Differential DNA Methylation in the Wild and Domestic Chicken	Methylation profiling by high throughput sequencing Expression profiling by high throughput sequencing	Gallus gallus	8	TXT	qinghe li	Apr 02, 2010
GSE21152	Conservation and divergence of methylation patterning in plants and animals	Methylation profiling by high throughput sequencing	Apis mellifera Arabidopsis thaliana Chlamydomonas reinhardtii Ciona intestinalis Danio rerio Mus musculus Oryza sativa Populus trichocarpa	14	TXT SRA Run Selector	matteo Pellegrini	Apr 09, 2010
GSE19824	Genome-wide evolutionary analysis of eukaryotic DNA methylation	Expression profiling by high throughput sequencing Methylation profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Apis mellifera Bombyx mori Chlorella variabilis Ciona intestinalis Coprinopsis cinerea Drosophila melanogaster Laccaria bicolor Nematostella vectensis Oryza sativa Phycomyces blakesleeanus Physcomitrium patens Postia placenta Selaginella moellendorffii Tetraodon nigroviridis Tribolium castaneum Uncinocarpus reesii Volvox carteri	33	GFF TXT SRA Run Selector	Toshiro Nishimura	Apr 15, 2010
GSE21242	Chromatin and Sequence Features that Define the Fine and Gross Structure of Genomics Methylation Patterns	Methylation profiling by high throughput sequencing	Homo sapiens Mus musculus	8	BED TXT SRA Run Selector	John R. Edwards	Apr 16, 2010
GSE21414	Genome-wide mapping of cytosine methylation revealed dynamic DNA methylation patterns associated with rice centromeres	Methylation profiling by high throughput sequencing	Oryza sativa	1	TXT SRA Run Selector	Yufeng Wu	Apr 22, 2010
GSE21673	Relationship between nucleosome positioning and DNA methylation	Methylation profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Genome binding/occupancy profiling by genome tiling array	Arabidopsis thaliana Homo sapiens	6	CEL TXT	matteo Pellegrini	May 29, 2010
GSE21821	Relationship between nucleosome positioning and DNA methylation: Bisulfite-Seq, ChIP-Seq, and Mnase-Seq	Methylation profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Arabidopsis thaliana Homo sapiens	4	TXT SRA Run Selector	matteo Pellegrini	May 29, 2010