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58 series

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Accession	Title	Series type(s)	Organism(s)	Samples	Supplementary	Contact	Release date
Filter		Methylation profiling by high throughput sequencing			TAR
GSE188968	Geminiviruses employ host DNA glycosylases to subvert DNA methylation-mediated defense	Methylation profiling by high throughput sequencing	Arabidopsis thaliana Nicotiana benthamiana	69	TAR SRA Run Selector	Yijun Qi	Dec 20, 2021
GSE63330	DNA methylation in mammalian placentas	Methylation profiling by high throughput sequencing	Bos taurus Canis lupus familiaris Equus caballus Homo sapiens Macaca mulatta Monodelphis domestica Mus musculus Saimiri boliviensis	20	TAR SRA Run Selector	Janine LaSalle	Aug 05, 2015
GSE210576	Efficient generation of marmoset primordial germ cell-like cells using induced pluripotent stem cells	Expression profiling by high throughput sequencing Methylation profiling by high throughput sequencing	Callithrix jacchus	31	H5 TAR TXT	keren cheng	Feb 17, 2023
GSE155677	Multimodal profiling of the transcriptional regulatory landscape of the developing mouse cortex identifies Neurog2 as a key epigenome remodeler	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Methylation profiling by high throughput sequencing Other	Escherichia coli Mus musculus	36	BED BEDGRAPH BW FA MTX PICKLE TAR TSV TXT SRA Run Selector	Boyan Bonev	Jan 27, 2022
GSE39775	Examination of four human tissue samples by MethylC-seq	Methylation profiling by high throughput sequencing	Homo sapiens	7	BED TAR SRA Run Selector	Janine LaSalle	Mar 28, 2013
GSE39777	Comparison of DNA methylation in human tissues	Methylation profiling by high throughput sequencing Expression profiling by high throughput sequencing	Homo sapiens	9	BED TAR	Janine LaSalle	Mar 28, 2013
GSE67615	DNA methylation in the placentas of typically developing and autistic children	Methylation profiling by high throughput sequencing	Homo sapiens	51	TAR SRA Run Selector	Janine LaSalle	Apr 05, 2018
GSE80105	Synergistic model of chromatin predicts Dnase-I accessibility	Genome binding/occupancy profiling by high throughput sequencing Methylation profiling by high throughput sequencing	Homo sapiens Mus musculus	8	TAR TSV TXT SRA Run Selector	David Gifford	Jul 20, 2016
GSE80808	Nucleation of DNA Repair Factors by FOXA1 Links DNA Demethylation to Transcriptional Pioneering	Genome binding/occupancy profiling by high throughput sequencing Methylation profiling by high throughput sequencing	Homo sapiens	8	BEDGRAPH TAR SRA Run Selector	Yu Zhang	Jun 08, 2016
GSE82022	Cerebral Organoids Recapitulate Epigenomic Signatures of the Human Fetal Brain	Expression profiling by high throughput sequencing Methylation profiling by high throughput sequencing	Homo sapiens	18	TAR TSV SRA Run Selector	Joseph R Ecker	Dec 20, 2016
GSE83532	Epigenomics Studies in Acute Myeloid Leukemia disease progression [enhanced RRBS-seq]	Methylation profiling by high throughput sequencing	Homo sapiens	293	TAR	Francine E. Garrett-Bakelman	Jun 21, 2016
GSE83534	Epigenomics Studies in Acute Myeloid Leukemia disease progression	Methylation profiling by high throughput sequencing Expression profiling by high throughput sequencing	Homo sapiens	427	TAR	Francine E. Garrett-Bakelman	Jun 21, 2016
GSE94866	Enrichment methods provide a feasible approach to comprehensive and adequately powered investigations of the methylome	Methylation profiling by high throughput sequencing	Homo sapiens	26	CSV TAR SRA Run Selector	Edwin van den Oord	Feb 15, 2017
GSE97179	Single Cell Methylome Signatures Reveal Distinct Neuronal Populations and Regulatory Elements in the Mammalian Cortex	Methylation profiling by high throughput sequencing Other	Homo sapiens Mus musculus	6172	TAR SRA Run Selector	Joseph R Ecker	Aug 10, 2017
GSE129469	piRNA-30473 contributes to tumorigenesis by regulating RNA m6A-methylation in DLBCL	Methylation profiling by high throughput sequencing	Homo sapiens	4	TAR SRA Run Selector	Wenzhuo Zhuang	Apr 08, 2021
GSE130140	Cancer-specific CTCF binding facilitates oncogenic transcriptional dysregulation	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Other Methylation profiling by high throughput sequencing	Homo sapiens	92	BED BW COV MATRIX NARROWPEAK SF TAR TXT SRA Run Selector	Zhenjia Wang	Aug 19, 2020
GSE130306	DNMT1 drives 4D genome rewiring during oncogene induced senescence	Genome binding/occupancy profiling by high throughput sequencing Expression profiling by high throughput sequencing Other Methylation profiling by high throughput sequencing	Homo sapiens	92	BED BW TAR TXT SRA Run Selector	Satish Sati	Mar 27, 2020
GSE159297	Transient naive reprogramming corrects hiPS cells functionally and epigenetically	Expression profiling by high throughput sequencing Methylation profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens	110	BIGWIG CGMAP H5 TAR	Ryan Lister	Aug 11, 2023
GSE160457	An all-to-all approach to the identification of sequence-specific readers for epigenetic DNA modifications on cytosine	Other Methylation profiling by high throughput sequencing	Homo sapiens synthetic construct	20	TAR XLS SRA Run Selector	Heng Zhu	Dec 01, 2020
GSE192882	Direct reprogramming of human fetal retinal pigment epithelial cells into photoreceptor-like cells	Expression profiling by high throughput sequencing Methylation profiling by high throughput sequencing	Homo sapiens	26	COV TAR TXT	Guoping Fan	Oct 28, 2022