GEO Browser - GEO

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58 series

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Accession	Title	Series type(s)	Organism(s)	Samples	Supplementary	Contact	Release date
Filter		Methylation profiling by high throughput sequencing			TAR
GSE19602	Global Epigenetic and Transcriptional Trends among Two Rice Subspecies and Their Reciprocal Hybrids.	Non-coding RNA profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Expression profiling by high throughput sequencing Methylation profiling by high throughput sequencing	Oryza sativa	24	BED TAR SRA Run Selector	guangming he	Jan 20, 2010
GSE39775	Examination of four human tissue samples by MethylC-seq	Methylation profiling by high throughput sequencing	Homo sapiens	7	BED TAR SRA Run Selector	Janine LaSalle	Mar 28, 2013
GSE39777	Comparison of DNA methylation in human tissues	Methylation profiling by high throughput sequencing Expression profiling by high throughput sequencing	Homo sapiens	9	BED TAR	Janine LaSalle	Mar 28, 2013
GSE63137	Epigenomic Signatures of Neuronal Diversity in the Mammalian Brain	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Methylation profiling by high throughput sequencing	Mus musculus	31	BED BW TAR TXT SRA Run Selector	Alisa Mo	Jun 17, 2015
GSE107614	Mutant IDH1 promotes glioma formation in vivo [Bisulfite-seq]	Methylation profiling by high throughput sequencing	Mus musculus	8	BED BW TAR SRA Run Selector	Sheri Holmen	Dec 01, 2018
GSE130140	Cancer-specific CTCF binding facilitates oncogenic transcriptional dysregulation	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Other Methylation profiling by high throughput sequencing	Homo sapiens	92	BED BW COV MATRIX NARROWPEAK SF TAR TXT SRA Run Selector	Zhenjia Wang	Aug 19, 2020
GSE130306	DNMT1 drives 4D genome rewiring during oncogene induced senescence	Genome binding/occupancy profiling by high throughput sequencing Expression profiling by high throughput sequencing Other Methylation profiling by high throughput sequencing	Homo sapiens	92	BED BW TAR TXT SRA Run Selector	Satish Sati	Mar 27, 2020
GSE155677	Multimodal profiling of the transcriptional regulatory landscape of the developing mouse cortex identifies Neurog2 as a key epigenome remodeler	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Methylation profiling by high throughput sequencing Other	Escherichia coli Mus musculus	36	BED BEDGRAPH BW FA MTX PICKLE TAR TSV TXT SRA Run Selector	Boyan Bonev	Jan 27, 2022
GSE161570	KMT2C Loss Promotes Small Cell Lung Cancer Metastasis through DNMT3A-mediated Epigenetic Reprogramming	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Methylation profiling by high throughput sequencing Other	Mus musculus	55	BED BW CGMAP CSV GAPPEDPEAK TAR XLSX SRA Run Selector	Xaingyu Pan	Feb 23, 2022
GSE80808	Nucleation of DNA Repair Factors by FOXA1 Links DNA Demethylation to Transcriptional Pioneering	Genome binding/occupancy profiling by high throughput sequencing Methylation profiling by high throughput sequencing	Homo sapiens	8	BEDGRAPH TAR SRA Run Selector	Yu Zhang	Jun 08, 2016
GSE201751	Global transcriptional, ATAC-sequencing, and methylation analyses of mouse totipotent potential stem cells and extended pluripotent stem cells	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Methylation profiling by high throughput sequencing	Mus musculus	37	BEDGRAPH TAR TXT	Yiming Sun	May 04, 2022
GSE209965	Decitabine-induced T cell remodeling facilitates a high antitumor response to PD-1 blockade therapy by promoting the expansion and effector function of CD8+ progenitor exhausted T cells	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Methylation profiling by high throughput sequencing	Mus musculus	24	BEDGRAPH TAR	Jing Nie	Jul 28, 2022
GSE159297	Transient naive reprogramming corrects hiPS cells functionally and epigenetically	Expression profiling by high throughput sequencing Methylation profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens	110	BIGWIG CGMAP H5 TAR	Ryan Lister	Aug 11, 2023
GSE72550	Epigenomic Landscapes of Retinal Rods and Cones	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Methylation profiling by high throughput sequencing	Mus musculus	33	BW TAR TXT SRA Run Selector	Alisa Mo	Mar 07, 2016
GSE83993	Allele-Specific Non-CG Methylation Marks Domains of Active Chromatin in Mouse Brain	Expression profiling by high throughput sequencing Methylation profiling by high throughput sequencing	Mus musculus	4	BW TAR TXT SRA Run Selector	Eran A Mukamel	Mar 30, 2017
GSE95697	Whole-genome bisulfite-seq (WGBS) on Lin-Sca1+Kit+ (LSK) bone marrow cells from wild-type C57BL/6J mice	Methylation profiling by high throughput sequencing	Mus musculus	1	BW TAR TXT SRA Run Selector	Aly Karsan	Dec 31, 2017
GSE99607	Impaired DNA demethylation of C/EBP sites causes premature aging	Methylation profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Expression profiling by high throughput sequencing Expression profiling by array Other	Mus musculus	58	BW TAR TSV TXT	Emil Karaulanov	Jun 11, 2018
GSE107616	Mutant IDH1 promotes glioma formation in vivo	Methylation profiling by high throughput sequencing Expression profiling by high throughput sequencing	Mus musculus	20	BW TAR	Sheri Holmen	Dec 01, 2018
GSE111839	Transcriptional and Epigenomic Landscapes of CNS and non-CNS Vascular Endothelial Cells	Expression profiling by high throughput sequencing Methylation profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	42	BW MTX NARROWPEAK TAR TSV TXT SRA Run Selector	Mark F Sabbagh	Sep 06, 2018
GSE154521	Temporal Analyses of Cardiac Chromatin Accessibility, DNA Methylation and Epigenomic Structure Reveal Locus-Specific Regulation	Genome binding/occupancy profiling by high throughput sequencing Expression profiling by high throughput sequencing Methylation profiling by high throughput sequencing	Mus musculus	47	BW CGMAP TAR	Tom Vondriska	Dec 01, 2021