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3481 series

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Accession	Title	Series type(s)	Organism(s)	Samples	Supplementary	Contact	Release date
Filter		Methylation profiling by high throughput sequencing			SRA Run Selector
GSE16256	UCSD Human Reference Epigenome Mapping Project	Genome binding/occupancy profiling by high throughput sequencing Methylation profiling by high throughput sequencing Expression profiling by high throughput sequencing Non-coding RNA profiling by high throughput sequencing	Homo sapiens	878	BAM BED WIG SRA Run Selector	UCSD AND SALK	Aug 03, 2009
GSE16368	UCSF-UBC Human Reference Epigenome Mapping Project	Genome binding/occupancy profiling by high throughput sequencing Non-coding RNA profiling by high throughput sequencing Expression profiling by high throughput sequencing Methylation profiling by high throughput sequencing	Homo sapiens	529	BAM BED TAB WIG SRA Run Selector	UCSF-UBC CENTER	Aug 03, 2009
GSE21714	Comparative methylome analysis of benign and malignant peripheral nerve sheath tumors	Methylation profiling by high throughput sequencing	Homo sapiens	3	BAM GFF SRA Run Selector	Gareth Wilson	Jan 01, 2011
GSE26810	Regulation of DNA methylation by CK2-mediated phosphorylation of DNMT3A (Methyl-Seq)	Methylation profiling by high throughput sequencing	Homo sapiens	2	BAM SRA Run Selector	Matthieu Defrance	Jul 17, 2014
GSE27322	de novo DNA Methylation Balances Hematopoietic Stem Cell Self-Renewal and Differentiation	Methylation profiling by high throughput sequencing Expression profiling by array	Mus musculus	10	BAM BED CEL SRA Run Selector	deqiang sun	Sep 30, 2011
GSE27468	Methylome analysis of 18 wild-type and mutant mouse ES, NP and MEF cells	Methylation profiling by high throughput sequencing	Mus musculus	18	BAM SRA Run Selector	Gareth Wilson	Feb 24, 2011
GSE29120	Bisulfite sequencing of ChIP DNA on breast cancer cells (HCC1954)	Methylation profiling by high throughput sequencing	Homo sapiens	3	BAM SRA Run Selector	Gary Chung Hon	Sep 16, 2011
GSE29127	Genome-wide DNA methylation mapping in breast cancer cells (HCC1954) and normal breast cells (HMEC)	Methylation profiling by high throughput sequencing	Homo sapiens	2	BAM SRA Run Selector	Gary Chung Hon	Sep 16, 2011
GSE29251	Genome-wide analysis distinguishes hyperglycemia regulated epigenetic signatures of primary vascular cells (ChIP-seq)	Genome binding/occupancy profiling by high throughput sequencing Methylation profiling by high throughput sequencing	Homo sapiens	13	BAM BED SRA Run Selector	Assam El-Osta	Jun 01, 2011
GSE30199	Base-resolution analyses of parent-of-origin and sequence dependent allele specific DNA methylation in the mouse genome (ChIP-seq and Methyl-seq)	Genome binding/occupancy profiling by high throughput sequencing Methylation profiling by high throughput sequencing	Mus musculus	10	BAM BED TXT SRA Run Selector	Wei Xie	Feb 15, 2012
GSE30558	Bisulphite-sequencing of chromatin immunoprecipitated DNA (BisChiP-seq) directly informs methylation status	Genome binding/occupancy profiling by high throughput sequencing Methylation profiling by high throughput sequencing	Homo sapiens	2	BAM BED CSV WIG SRA Run Selector	Mark Robinson	Jan 18, 2012
GSE32687	Identification of maternal imprinting control regions (ICRs) in the post-implantation mouse embryo.	Methylation profiling by high throughput sequencing	Mus musculus	19	BAM SRA Run Selector	Reiner Schulz	Oct 04, 2012
GSE33579	Base-resolution analyses of parent-of-origin and sequence dependent allele specific DNA methylation in the mouse genome (MRE-seq)	Methylation profiling by high throughput sequencing	Homo sapiens Mus musculus	5	BAM TXT SRA Run Selector	Wei Xie	Feb 15, 2012
GSE36114	Genome-wide analysis of histone modification, protein-DNA binding, cytosine methylation and transcriptome data in mouse and human ES cells and pig iPS cells	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Methylation profiling by high throughput sequencing	Homo sapiens Mus musculus Sus scrofa	47	BAM BED GTF TXT SRA Run Selector	Pengfei Yu	Feb 28, 2012
GSE38596	Genome-wide maps of cytosine methylation, cytosine hydroxylmethylation and small non coding RNAs in mouse ES cells and upon guided differentiation to mesoendoderm cells	Non-coding RNA profiling by high throughput sequencing Methylation profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	36	BAM BED GTF TXT SRA Run Selector	Pengfei Yu	Sep 22, 2012
GSE47966	Global epigenomic reconfiguration during mammalian brain development	Methylation profiling by high throughput sequencing Expression profiling by high throughput sequencing	Homo sapiens Mus musculus	65	BAM TXT SRA Run Selector	Joseph R Ecker	Jul 03, 2013
GSE81436	The ortholog of DDM1 is mainly required for CHG and CG methylation of heterochromatin and is involved in DRM2-mediated CHH methylation that targets mostly genic regions of the rice genome	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Methylation profiling by high throughput sequencing Non-coding RNA profiling by high throughput sequencing	Oryza sativa Japonica Group	17	BAM BW CSV GFF WIG XLS SRA Run Selector	chao zhou	Jun 13, 2016
GSE99921	Extensive sex differences at the initiation of meiotic recombination	Genome binding/occupancy profiling by high throughput sequencing Other Third-party reanalysis Methylation profiling by high throughput sequencing	Mus musculus	22	BAM BED BEDGRAPH SRA Run Selector	Kevin Brick	Sep 20, 2018
GSE180292	Genome-wide differential methylation analysis of ovarian cancer and normal tissue samples	Methylation profiling by high throughput sequencing	Homo sapiens	8	BAM SRA Run Selector	VIVEK KUMAR	Oct 05, 2021
GSE52688	The RON receptor tyrosine kinase promotes metastasis by triggering epigenetic reprogramming through the thymine glycosylase MBD4 (Bisulfite-Seq)	Methylation profiling by high throughput sequencing	Homo sapiens	18	BAR SRA Run Selector	Stephanie Cunha	Jan 02, 2014