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3481 series

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Accession	Title	Series type(s)	Organism(s)	Samples	Supplementary	Contact	Release date
Filter		Methylation profiling by high throughput sequencing			SRA Run Selector
GSE10966	Highly integrated epigenome maps in Arabidopsis - whole genome shotgun bisulfite sequencing	Methylation profiling by high throughput sequencing	Arabidopsis thaliana	4	TXT SRA Run Selector	Joseph R Ecker	Apr 21, 2008
GSE11034	Genome-scale DNA methylation maps of pluripotent and differentiated cells	Methylation profiling by high throughput sequencing	Mus musculus	18	TXT SRA Run Selector	Tarjei S Mikkelsen	Jul 06, 2008
GSE14254	Global Mapping of Histone H3 K4 and K27 Trimethylation: Lineage Fate Determination of Differentiating CD4+ T Cells	Methylation profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	12	BED SRA Run Selector	Weiqun Peng	Jan 21, 2009
GSE14570	Extensive demethylation of repetitive elements during seed development underlies gene imprinting	Methylation profiling by genome tiling array Methylation profiling by high throughput sequencing	Arabidopsis thaliana	10	BEDGRAPH GFF PAIR TXT SRA Run Selector	Jorja Henikoff	Jun 12, 2009
GSE15286	Epigenetic modifications and their relationships to smRNA and mRNA transcriptomes in maize	Genome binding/occupancy profiling by high throughput sequencing Non-coding RNA profiling by high throughput sequencing Expression profiling by high throughput sequencing Methylation profiling by high throughput sequencing	Zea mays	14	BED FA TXT SRA Run Selector	Xiangfeng Wang	Apr 28, 2009
GSE15922	Genome-wide demethylation of Arabidopsis endosperm	Methylation profiling by high throughput sequencing	Arabidopsis thaliana	4	GFF TXT SRA Run Selector	Toshiro Nishimura	Jun 16, 2009
GSE16071	Loss of H3K27 monomethylation leads to DNA-methylation-independent release of gene silencing	Methylation profiling by high throughput sequencing	Arabidopsis thaliana	2	SRA Run Selector	matteo Pellegrini	Jun 01, 2009
GSE16256	UCSD Human Reference Epigenome Mapping Project	Genome binding/occupancy profiling by high throughput sequencing Methylation profiling by high throughput sequencing Expression profiling by high throughput sequencing Non-coding RNA profiling by high throughput sequencing	Homo sapiens	878	BAM BED WIG SRA Run Selector	UCSD AND SALK	Aug 03, 2009
GSE16368	UCSF-UBC Human Reference Epigenome Mapping Project	Genome binding/occupancy profiling by high throughput sequencing Non-coding RNA profiling by high throughput sequencing Expression profiling by high throughput sequencing Methylation profiling by high throughput sequencing	Homo sapiens	529	BAM BED TAB WIG SRA Run Selector	UCSF-UBC CENTER	Aug 03, 2009
GSE17001	High definition profiling of mammalian DNA methylation by array capture and single molecule bisulfite sequencing	Methylation profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens	4	BED TXT SRA Run Selector	Emily Hodges	Jul 08, 2009
GSE17554	Nucleosome deposition and DNA methylation at coding region boundaries	Methylation profiling by high throughput sequencing	Homo sapiens	1	BED SRA Run Selector	Jung Kyoon Choi	Aug 11, 2009
GSE17642	Genome-wide mapping of Eset-binding sites and H3K9me3 state in mouse embryonic stem cells	Genome binding/occupancy profiling by high throughput sequencing Methylation profiling by high throughput sequencing	Mus musculus	3	BED TXT SRA Run Selector	Mikael Huss	Nov 04, 2009
GSE17972	The DNA methylome of human peripheral blood mononuclear cells	Methylation profiling by high throughput sequencing	Homo sapiens	77	TXT SRA Run Selector	Hong zhi Cao	Sep 04, 2010
GSE19418	Dynamic Changes in the Human Methylome During Differentiation	Methylation profiling by high throughput sequencing	Homo sapiens	3	TXT SRA Run Selector	Chia-Lin Wei	Dec 29, 2009
GSE19602	Global Epigenetic and Transcriptional Trends among Two Rice Subspecies and Their Reciprocal Hybrids.	Non-coding RNA profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Expression profiling by high throughput sequencing Methylation profiling by high throughput sequencing	Oryza sativa	24	BED TAR SRA Run Selector	guangming he	Jan 20, 2010
GSE19786	Neuronal MeCP2 is expressed at near histone-octamer levels and globally alters the chromatin state	Genome binding/occupancy profiling by high throughput sequencing Methylation profiling by high throughput sequencing	Mus musculus	2	BEDGRAPH SRA Run Selector	Adrian P Bird	Mar 04, 2010
GSE19824	Genome-wide evolutionary analysis of eukaryotic DNA methylation	Expression profiling by high throughput sequencing Methylation profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Apis mellifera Bombyx mori Chlorella variabilis Ciona intestinalis Coprinopsis cinerea Drosophila melanogaster Laccaria bicolor Nematostella vectensis Oryza sativa Phycomyces blakesleeanus Physcomitrium patens Postia placenta Selaginella moellendorffii Tetraodon nigroviridis Tribolium castaneum Uncinocarpus reesii Volvox carteri	33	GFF TXT SRA Run Selector	Toshiro Nishimura	Apr 15, 2010
GSE19889	Repressive and active histone methylation mark distinct promoters in human and mouse spermatozoa (Illumina)	Methylation profiling by high throughput sequencing	Homo sapiens	7	WIG SRA Run Selector	Antoine Peters	May 16, 2010
GSE19937	Human embryonic stem cells HELP-tagging cytosine methylation data (Albert Einstein College of Medicine)	Methylation profiling by high throughput sequencing	Homo sapiens	4	BED SRA Run Selector	John Greally	Apr 12, 2010
GSE19960	Genome-wide erasure of DNA methylation in mouse primordial germ cells is affected by Aid deficiency	Methylation profiling by high throughput sequencing	Mus musculus	12	TXT SRA Run Selector	matteo Pellegrini	Jan 26, 2010