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50 series

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Accession	Title	Series type(s)	Organism(s)	Samples	Supplementary	Contact	Release date
Filter		Methylation profiling by high throughput sequencing			MTX
GSE87064	The Dynamic Epigenetic Landscape of the Retina During Development, Reprogramming, and Tumorigenesis	Genome binding/occupancy profiling by high throughput sequencing Expression profiling by high throughput sequencing Methylation profiling by high throughput sequencing Other	Homo sapiens Mus musculus	868	BED BW MTX TSV TXT	Beisi Xu	May 03, 2017
GSE90553	Dissecting the Functional Consequences of de Novo DNA Methylation Dynamics in Human Motor Neuron Differentiation and Physiology	Expression profiling by high throughput sequencing Methylation profiling by high throughput sequencing	Homo sapiens	100	BED MTX TSV TXT	Michael Johannes Ziller	Mar 15, 2018
GSE144693	Beta cell-specific CD8+ T cells maintain stem-cell memory-associated epigenetic programs during type 1 diabetes	Methylation profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens Mus musculus	39	BED MTX TSV	yiping fan	Apr 07, 2020
GSE155677	Multimodal profiling of the transcriptional regulatory landscape of the developing mouse cortex identifies Neurog2 as a key epigenome remodeler	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Methylation profiling by high throughput sequencing Other	Escherichia coli Mus musculus	36	BED BEDGRAPH BW FA MTX PICKLE TAR TSV TXT SRA Run Selector	Boyan Bonev	Jan 27, 2022
GSE161676	Identifying non-genetic determinants of malignant clonal fitness at single cell resolution	Expression profiling by high throughput sequencing Other Methylation profiling by high throughput sequencing	Mus musculus synthetic construct	271	BED MTX SEG TSV VCF	Mark Dawson	Nov 08, 2021
GSE168807	Dnmt3a-Mutant Hematopoietic Stem cells are resistant to inflammatory stress	Methylation profiling by high throughput sequencing Expression profiling by high throughput sequencing	Mus musculus	56	BED MTX TSV SRA Run Selector	Grant A Challen	Feb 22, 2022
GSE188389	Antigen cross-presentation in young tumor-bearing hosts promotes CD8 T cell terminal differentiation	Expression profiling by high throughput sequencing Methylation profiling by high throughput sequencing	Homo sapiens Mus musculus	5	BED MTX TSV	yiping fan	Feb 28, 2022
GSE208742	Direct neuronal reprogramming of mouse astrocytes is associated with multiscale epigenome remodeling and requires Yy1	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Methylation profiling by high throughput sequencing Other	Mus musculus	64	BED BEDGRAPH BW MTX NARROWPEAK TAB TSV TXT XLSX SRA Run Selector	Boyan Bonev	Apr 30, 2024
GSE224563	DNA methylation in the mouse cochlea promotes maturation of supporting cells and contributes to the failure of hair cell regeneration	Expression profiling by high throughput sequencing Methylation profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	52	BED BW COV H5 H5SEURAT MTX RDS TSV	John Duc Nguyen	Feb 07, 2023
GSE224850	H1FOO-DD promotes efficiency and uniformity in reprogramming to naive pluripotency	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Methylation profiling by high throughput sequencing	Homo sapiens	168	BED IDAT MTX TSV TXT	Akira Kunitomi	May 01, 2024
GSE226580	Stem Cell Activity-Coupled Suppression of Endogenous Retrovirus Governs Adult Tissue Regeneration	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Methylation profiling by high throughput sequencing	Mus musculus	94	BED BROADPEAK MTX NARROWPEAK TSV	Yejing Ge	Oct 17, 2024
GSE236290	MBD2 couples DNA methylation to Transposable Elements silencing during male gametogenesis	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Methylation profiling by high throughput sequencing	Arabidopsis thaliana	146	BED BW MTX NARROWPEAK TSV TXT WIG	Shuya Wang	Jan 12, 2024
GSE190371	Vitamin C deficiency causes cell type-specific epigenetic reprogramming and acute tubular necrosis	Expression profiling by high throughput sequencing Methylation profiling by high throughput sequencing	Mus musculus	16	BEDGRAPH MTX TSV TXT SRA Run Selector	Zihui Yu	Dec 09, 2021
GSE222726	Inducible disruption of Tet genes results in myeloid malignancy, readthrough transcription, and a heterochromatin-to-euchromatin switch	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Methylation profiling by high throughput sequencing	Mus musculus	36	BEDGRAPH MTX TSV TXT	Isaac F. López-Moyado	Apr 17, 2023
GSE236728	Synthetic essentiality of thymine DNA glycosylase in p53-deficient cancer	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Methylation profiling by high throughput sequencing	Homo sapiens Mus musculus	69	BEDGRAPH BW MTX NARROWPEAK TSV	Zhenyu Shao	Jun 19, 2024
GSE251985	Remodeling the step-wise mouse placental development by using totipotent blastomere-like stem cells	Genome binding/occupancy profiling by high throughput sequencing Expression profiling by high throughput sequencing Methylation profiling by high throughput sequencing	Mus musculus	36	BEDGRAPH BW MTX TSV	Chunhui Wang	Jan 01, 2025
GSE268920	RNA-seq, Bisulfite-seq in A549 cells and scRNA-seq of TIL	Methylation profiling by high throughput sequencing Expression profiling by high throughput sequencing	Homo sapiens Mus musculus	15	BEDGRAPH MTX TSV	Zhou Xindi	Jan 03, 2025
GSE171127	Comparative parallel meta-analysis of cells undergoing reprogramming to pluripotency and trophectoderm states	Genome binding/occupancy profiling by high throughput sequencing Methylation profiling by high throughput sequencing Expression profiling by high throughput sequencing Genome variation profiling by high throughput sequencing	Mus musculus	184	BETA BIGWIG MTX TSV TXT SRA Run Selector	Tommy Kaplan	Apr 28, 2022
GSE147490	mouse skin epithelial cells	Expression profiling by high throughput sequencing Methylation profiling by high throughput sequencing	Mus musculus	8	BIGWIG MTX TSV	Tom Samuel Carroll	Sep 04, 2020
GSE165023	Sstr2 knockout mice	Expression profiling by high throughput sequencing Methylation profiling by high throughput sequencing	Homo sapiens Mus musculus	52	BIGWIG BW MTX TSV	Byoung-Ha Yoon	Jan 04, 2023