GEO Browser - GEO

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44 series

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Accession	Title	Series type(s)	Organism(s)	Samples	Supplementary	Contact	Release date
Filter		Methylation profiling by high throughput sequencing			MTX
GSE162724	germ cells	Expression profiling by high throughput sequencing Methylation profiling by high throughput sequencing Other	Mus musculus	50	BW MTX TSV TXT	teissandier aurelie	Jan 25, 2022
GSE155677	Multimodal profiling of the transcriptional regulatory landscape of the developing mouse cortex identifies Neurog2 as a key epigenome remodeler	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Methylation profiling by high throughput sequencing Other	Escherichia coli Mus musculus	36	BED BEDGRAPH BW FA MTX PICKLE TAR TSV TXT SRA Run Selector	Boyan Bonev	Jan 27, 2022
GSE208742	Direct neuronal reprogramming of mouse astrocytes is associated with multiscale epigenome remodeling and requires Yy1	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Methylation profiling by high throughput sequencing Other	Mus musculus	64	BED BEDGRAPH BW MTX NARROWPEAK TAB TSV TXT XLSX SRA Run Selector	Boyan Bonev	Apr 30, 2024
GSE147490	mouse skin epithelial cells	Expression profiling by high throughput sequencing Methylation profiling by high throughput sequencing	Mus musculus	8	BIGWIG MTX TSV	Tom Samuel Carroll	Sep 04, 2020
GSE168807	Dnmt3a-Mutant Hematopoietic Stem cells are resistant to inflammatory stress	Methylation profiling by high throughput sequencing Expression profiling by high throughput sequencing	Mus musculus	56	BED MTX TSV SRA Run Selector	Grant A Challen	Feb 22, 2022
GSE197501	Combinatorial quantification of 5mC and 5hmC at individual CpG dyads and the transcriptome in single cells reveals modulators of DNA methylation maintenance fidelity	Methylation profiling by high throughput sequencing Other	Homo sapiens Mus musculus synthetic construct	52	CSV MTX RDS TSV TXT XLSX	Alex Chialastri	Aug 07, 2023
GSE161676	Identifying non-genetic determinants of malignant clonal fitness at single cell resolution	Expression profiling by high throughput sequencing Other Methylation profiling by high throughput sequencing	Mus musculus synthetic construct	271	BED MTX SEG TSV VCF	Mark Dawson	Nov 08, 2021
GSE212007	CDCA7-associated global aberrant DNA hypomethylation translates to localized, tissue-specific transcriptional responses	Expression profiling by high throughput sequencing Methylation profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Other	Mus musculus	36	BW MTX TSV	Lucia Daxinger	Feb 09, 2024
GSE206387	YTHDF2 inhibition potentiates radiotherapy by reprogramming suppressive myeloid cells	Expression profiling by high throughput sequencing Methylation profiling by high throughput sequencing	Mus musculus	46	MTX NARROWPEAK TSV TXT	Xiaoyang Dou	Apr 28, 2023
GSE158067	Single-cell multi-omics in human clonal hematopoiesis reveals that DNMT3A R882 mutations perturb early progenitor states through selective hypomethylation.	Methylation profiling by high throughput sequencing	Homo sapiens Mus musculus	26	CSV MTX TSV TXT XLSX SRA Run Selector	Neville Dusaj	Jul 05, 2022
GSE144693	Beta cell-specific CD8+ T cells maintain stem-cell memory-associated epigenetic programs during type 1 diabetes	Methylation profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens Mus musculus	39	BED MTX TSV	yiping fan	Apr 07, 2020
GSE188389	Antigen cross-presentation in young tumor-bearing hosts promotes CD8 T cell terminal differentiation	Expression profiling by high throughput sequencing Methylation profiling by high throughput sequencing	Homo sapiens Mus musculus	5	BED MTX TSV	yiping fan	Feb 28, 2022
GSE206713	Laminin111-based defined culture promoting self-renewing human pluripotent stem cells with properties of the early post-implantation epiblast	Expression profiling by high throughput sequencing Methylation profiling by high throughput sequencing	Homo sapiens	35	MTX TSV	Michal Gropp	Nov 13, 2022
GSE201665	Inhibition of mutant IDH1 promotes cycling of acute myeloid leukemia stem cells	Expression profiling by high throughput sequencing Methylation profiling by high throughput sequencing	Mus musculus	32	MTX TSV	Emily Gruber	Aug 17, 2022
GSE136929	Human embryonic stem cell-derived organoidal retinoblastoma reveals cancerous origin and therapeutic target	Methylation profiling by high throughput sequencing Expression profiling by high throughput sequencing	Homo sapiens	89	BW CSV MTX TSV TXT SRA Run Selector	Zibing Jin	Sep 05, 2020
GSE171127	Comparative parallel meta-analysis of cells undergoing reprogramming to pluripotency and trophectoderm states	Genome binding/occupancy profiling by high throughput sequencing Methylation profiling by high throughput sequencing Expression profiling by high throughput sequencing Genome variation profiling by high throughput sequencing	Mus musculus	184	BETA BIGWIG MTX TSV TXT SRA Run Selector	Tommy Kaplan	Apr 28, 2022
GSE216731	LN-stem, tumor stem, tumor terminally differentiated CD8 T cells from human kidney cancer	Expression profiling by high throughput sequencing Methylation profiling by high throughput sequencing	Homo sapiens Mus musculus	67	CSV MTX TSV XLSX	Haydn Kissick	Nov 03, 2022
GSE199885	Single substitution in H3.3G34 alters DNMT3A recruitment to cause progressive neurodegeneration	Expression profiling by high throughput sequencing Methylation profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	62	BW MTX TSV	Claudia L Kleinman	Mar 16, 2023
GSE137337	Epigenetic regulator function through mouse gastrulation	Expression profiling by high throughput sequencing Methylation profiling by high throughput sequencing	Mus musculus	54	BW MTX TSV SRA Run Selector	Helene Kretzmer	Apr 07, 2020
GSE204908	Single-cell multi-omics profiling links dynamic DNA methylation to cell fate decisions during early mammalian organogenesis.	Expression profiling by high throughput sequencing Methylation profiling by high throughput sequencing	Mus musculus	2617	MTX TSV	Felix Krueger	Jul 19, 2022