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22 series

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Accession	Title	Series type(s)	Organism(s)	Samples	Supplementary	Contact	Release date
Filter		Methylation profiling by high throughput sequencing			HIC
GSE185775	Repression and 3D-restructuring resolves regulatory conflicts in evolutionarily rearranged genomes	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Methylation profiling by high throughput sequencing Other	Gallus gallus Monodelphis domestica Mus musculus	88	BW HIC	Michael I Robson	Sep 29, 2022
GSE103477	Transcription elongation regulates genome 3D structure	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Methylation profiling by high throughput sequencing Other	Homo sapiens	253	BED BEDGRAPH HIC TXT SRA Run Selector	Christopher Benner	Aug 23, 2018
GSE104579	DNA methylation state is associated with the formation of loops and links in hematopoietic stem cells	Methylation profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Other Expression profiling by high throughput sequencing	Homo sapiens	18	BED BW HIC	Jianzhong Su	Nov 24, 2017
GSE107447	Altered chromosomal topology drives oncogenic programs in SDH-deficient GISTs	Genome binding/occupancy profiling by high throughput sequencing Methylation profiling by high throughput sequencing Expression profiling by high throughput sequencing Other	Homo sapiens	100	BED BW CSV HIC TXT	Yotam Drier	Oct 16, 2019
GSE118716	Epigenetic reprogramming at estrogen-receptor binding sites alters 3D chromatin landscape in endocrine resistant breast cancer	Genome binding/occupancy profiling by high throughput sequencing Other Expression profiling by high throughput sequencing Methylation profiling by high throughput sequencing	Homo sapiens	40	BB BW HIC TXT VCF	Joanna Achinger-Kawecka	Dec 11, 2019
GSE121671	Tet inactivation disrupts YY1 binding and long-range chromatin interactions to cause developmental defects in embryonic heart	Methylation profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Expression profiling by high throughput sequencing Other	Homo sapiens Mus musculus	23	BW HIC TXT SRA Run Selector	Jia Li	Aug 07, 2019
GSE148958	Systematic Functional Characterization of Antisense eRNA of Protocadherin alpha HS5-1 Enhancer	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Other Methylation profiling by high throughput sequencing	Homo sapiens Mus musculus	274	BEDGRAPH FPKM_TRACKING HIC SRA Run Selector	Yuxiao Zhou	Oct 02, 2021
GSE171074	The potential of epigenetic therapy to target the 3D epigenome in endocrine-resistant breast cancer	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Methylation profiling by array Other Methylation profiling by high throughput sequencing	Homo sapiens	88	BED BW HIC IDAT NARROWPEAK TXT	Joanna Achinger-Kawecka	Dec 12, 2021
GSE183934	Perturbation of TET2 condensation induces genome-wide promiscuous DNA hypomethylation and curtails leukemia cell growth	Methylation profiling by high throughput sequencing	Homo sapiens Mus musculus	50	BW HIC TXT SRA Run Selector	Jia Li	Jun 16, 2024
GSE195631	HPV integration generates cellular super enhancer and functions as ecDNA to regulate genome-wide transcription	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Other Methylation profiling by high throughput sequencing	Homo sapiens	77	BW HIC TXT XLS	yuyan wang	Apr 19, 2023
GSE221053	Transposable elements as lineage-specific enhancers in endodermal-lineage cancers	Expression profiling by high throughput sequencing Other Genome binding/occupancy profiling by high throughput sequencing Methylation profiling by high throughput sequencing	Homo sapiens	30	BROADPEAK BW HIC NARROWPEAK TXT	Konsta Karttunen	Aug 11, 2023
GSE253634	Chromatin conformation and histone modification profiling across human kidney anatomic regions	Genome binding/occupancy profiling by high throughput sequencing Methylation profiling by high throughput sequencing	Homo sapiens	24	HIC	Benjamin Humphreys	Jun 20, 2024
GSE238136	The genomes and epigenomes of aquatic plants (Lemnaceae) promote triploid hybridization and clonal reproduction	Methylation profiling by high throughput sequencing Other Non-coding RNA profiling by high throughput sequencing Expression profiling by high throughput sequencing	Lemna gibba Lemna japonica Lemna minor Lemna turionifera Spirodela polyrhiza Wolffia australiana	42	BW HIC VCF	Robert A Martienssen	Dec 12, 2023
GSE119171	Long-range epigenetic concordance revealed by simultaneous profiling of DNA methylation and chromosomal conformation changes in bulk and single cell Methyl-HiC	Methylation profiling by high throughput sequencing Other	Mus musculus	48	BED HIC TXT SRA Run Selector	Guoqiang Li	Nov 16, 2018
GSE125318	Epigenomic analysis of gastrulation identifies a unique chromatin state for primed pluripotency	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Methylation profiling by high throughput sequencing Other	Mus musculus	104	BED HIC TXT SRA Run Selector	Wei Xie	Dec 18, 2019
GSE138102	G9a plays distinct roles in maintaining DNA methylation, retrotransposon silencing and chromatin looping	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Methylation profiling by high throughput sequencing Other	Mus musculus	130	BW HIC TSV SRA Run Selector	Qinghong Jiang	Oct 26, 2020
GSE183675	Tet2 deficiency altered hematopoietic stem and progenitor cells ageing process	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Methylation profiling by high throughput sequencing Other	Mus musculus	53	BW CSV HIC TSV TXT SRA Run Selector	Jia Li	Aug 11, 2023
GSE200016	Spatial organization of H3K9me2/3-marked heterochromatin is redundantly maintained by either the H3K9 or H3K27 methylation pathway	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Methylation profiling by high throughput sequencing Other	Mus musculus	51	BW HIC TXT WIG	Kei Fukuda	Apr 05, 2022
GSE226502	Epigenetic evolution of the Ly49 gene family	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Methylation profiling by high throughput sequencing Other	Mus musculus Rattus norvegicus	65	BEDGRAPH BW CSV FA HIC TXT	Changxu Fan	Apr 20, 2024
GSE228519	Transcriptional and epigenomic profiling identifies YAP signaling as a key regulator of intestinal epithelium maturation	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Methylation profiling by high throughput sequencing Other	Mus musculus	41	BW HIC TDF	Laura Maarit Pikkupeura	Jul 13, 2023