GEO Browser - GEO

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23 series

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Accession	Title	Series type(s)	Organism(s)	Samples	Supplementary	Contact	Release date
Filter		Methylation profiling by high throughput sequencing			FA
GSE76076	Conserved imprinting associated with unique epigenetic signatures in the Arabidopsis genus	Expression profiling by high throughput sequencing Methylation profiling by high throughput sequencing	Arabidopsis lyrata	38	FA GTF TXT SRA Run Selector	Mary Gehring	Sep 01, 2016
GSE83355	The MBD7 complex promotes expression of methylated transgenes without significantly altering their methylation status	Methylation profiling by high throughput sequencing	Arabidopsis thaliana	32	BED FA WIG SRA Run Selector	Julie Ann Law	Apr 26, 2017
GSE201629	Depositing centromere repeats induces heritable intragenic heterochromatin establishment and spreading in Arabidopsis	Methylation profiling by high throughput sequencing Non-coding RNA profiling by high throughput sequencing	Arabidopsis thaliana	19	BW FA	Xuehua Zhong	May 31, 2023
GSE158514	Mapping epigenetic divergence in the massive radiation of Lake Malawi cichlid fishes	Expression profiling by high throughput sequencing Methylation profiling by high throughput sequencing	Astatotilapia calliptera Aulonocara stuartgranti Diplotaxodon limnothrissa Maylandia zebra Petrotilapia genalutea Pundamilia nyererei Rhamphochromis longiceps	60	BW FA TXT SRA Run Selector	Grégoire M Vernaz	Aug 19, 2021
GSE74026	Differential DNA Methylation Analysis without a Reference Genome	Methylation profiling by high throughput sequencing	Bos taurus Cyprinus carpio Homo sapiens	44	BED FA SRA Run Selector	Christoph Bock	Dec 03, 2015
GSE31577	Genome-wide analysis of global and caste-specific DNA methylation in two ant species: Camponotus floridanus and Harpegnathos saltator	Methylation profiling by high throughput sequencing Non-coding RNA profiling by high throughput sequencing Expression profiling by high throughput sequencing	Camponotus floridanus Harpegnathos saltator	47	BEDGRAPH FA	Hong zhi Cao	Aug 09, 2012
GSE204730	Salinity stress response in chickpea	Expression profiling by high throughput sequencing Methylation profiling by high throughput sequencing Non-coding RNA profiling by high throughput sequencing	Cicer arietinum	20	FA TXT	Rohini Garg	Feb 15, 2023
GSE124427	A comprehensive epigenomic analysis of phenotypically distinguishable, genetically identical female and male Daphnia pulex	Methylation profiling by high throughput sequencing Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Daphnia pulex	31	FA GFF NARROWPEAK TXT SRA Run Selector	Jouni Antero Kvist	Oct 18, 2019
GSE158737	DNA methylation-mediated modulation of rapid desiccation tolerance acquisition and dehydration stress memory in the resurrection plant Boea hygrometrica	Expression profiling by high throughput sequencing Methylation profiling by high throughput sequencing	Dorcoceras hygrometricum	51	FA XLSX SRA Run Selector	Run-Ze Sun	Jun 08, 2021
GSE155677	Multimodal profiling of the transcriptional regulatory landscape of the developing mouse cortex identifies Neurog2 as a key epigenome remodeler	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Methylation profiling by high throughput sequencing Other	Escherichia coli Mus musculus	36	BED BEDGRAPH BW FA MTX PICKLE TAR TSV TXT SRA Run Selector	Boyan Bonev	Jan 27, 2022
GSE113084	RdDM is involved in epigenetic regulation of strawberry fruit ripening	Expression profiling by high throughput sequencing Non-coding RNA profiling by high throughput sequencing Methylation profiling by high throughput sequencing	Fragaria x ananassa	17	BW FA GFF3 TXT SRA Run Selector	yijing zhang	Nov 13, 2018
GSE157451	Relative DNA methylation and demethylation efficiencies during postnatal liver development regulate hepatitis B virus biosynthesis	Methylation profiling by high throughput sequencing	Hepatitis B virus Mus musculus	120	FA TXT SRA Run Selector	Mark Maienschein-Cline	Dec 10, 2020
GSE242448	Ten-eleven translocation (Tet) methylcytosine dioxygenases dependent viral DNA demethylation mediates in vivo hepatitis B virus (HBV) biosynthesis	Methylation profiling by high throughput sequencing	Hepatitis B virus	38	FA TXT	Mark Maienschein-Cline	Nov 29, 2023
GSE50047	Multiplex mapping of chromatin accessibility and DNA methylation within targeted single molecules identifies epigenetic heterogeneity in neural stem cells and glioblastoma	Methylation profiling by high throughput sequencing	Homo sapiens	4	FA TSV TXT SRA Run Selector	Nancy H Nabilsi	Oct 03, 2013
GSE63938	Targeted CpG island methylation in human pluripotent stem cells	Methylation profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens	29	BEDGRAPH FA SRA Run Selector	April Elizabeth Williams	Dec 01, 2017
GSE172629	Heterogeneous phenotypes of Pten-null hepatocellular carcinoma in hepatitis B virus transgenic mice parallels liver lobule zonal gene expression patterns	Expression profiling by high throughput sequencing Methylation profiling by high throughput sequencing	Mus musculus	20	FA TXT SRA Run Selector	Mark Maienschein-Cline	Jan 05, 2022
GSE226502	Epigenetic evolution of the Ly49 gene family	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Methylation profiling by high throughput sequencing Other	Mus musculus Rattus norvegicus	65	BEDGRAPH BW CSV FA HIC TXT	Changxu Fan	Apr 20, 2024
GSE229961	Upstream regulator of genomic imprinting in rice is a small RNA-associated chromatin remodeler	Non-coding RNA profiling by high throughput sequencing Expression profiling by high throughput sequencing Methylation profiling by high throughput sequencing	Oryza sativa	14	BIGWIG FA TXT	Shivaprasad Padubidri V.	Jul 27, 2024
GSE152639	Structure of DNA methyltransferases DNMT3A/DNMT3B bound to a nucleosome [seq]	Methylation profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	synthetic construct	20	BW FA VCF SRA Run Selector	Peter A Jones	Jun 17, 2020
GSE155864	Experimental competition induces immediate and lasting effects on the neurogenome in free-living female birds	Expression profiling by high throughput sequencing Methylation profiling by high throughput sequencing	Tachycineta bicolor	62	FA FNA TSV SRA Run Selector	Kimberly Rosvall	Mar 10, 2021