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23 series

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Accession	Title	Series type(s)	Organism(s)	Samples	Supplementary	Contact	Release date
Filter		Methylation profiling by high throughput sequencing			FA
GSE15286	Epigenetic modifications and their relationships to smRNA and mRNA transcriptomes in maize	Genome binding/occupancy profiling by high throughput sequencing Non-coding RNA profiling by high throughput sequencing Expression profiling by high throughput sequencing Methylation profiling by high throughput sequencing	Zea mays	14	BED FA TXT SRA Run Selector	Xiangfeng Wang	Apr 28, 2009
GSE31577	Genome-wide analysis of global and caste-specific DNA methylation in two ant species: Camponotus floridanus and Harpegnathos saltator	Methylation profiling by high throughput sequencing Non-coding RNA profiling by high throughput sequencing Expression profiling by high throughput sequencing	Camponotus floridanus Harpegnathos saltator	47	BEDGRAPH FA	Hong zhi Cao	Aug 09, 2012
GSE50047	Multiplex mapping of chromatin accessibility and DNA methylation within targeted single molecules identifies epigenetic heterogeneity in neural stem cells and glioblastoma	Methylation profiling by high throughput sequencing	Homo sapiens	4	FA TSV TXT SRA Run Selector	Nancy H Nabilsi	Oct 03, 2013
GSE74026	Differential DNA Methylation Analysis without a Reference Genome	Methylation profiling by high throughput sequencing	Bos taurus Cyprinus carpio Homo sapiens	44	BED FA SRA Run Selector	Christoph Bock	Dec 03, 2015
GSE76076	Conserved imprinting associated with unique epigenetic signatures in the Arabidopsis genus	Expression profiling by high throughput sequencing Methylation profiling by high throughput sequencing	Arabidopsis lyrata	38	FA GTF TXT SRA Run Selector	Mary Gehring	Sep 01, 2016
GSE83355	The MBD7 complex promotes expression of methylated transgenes without significantly altering their methylation status	Methylation profiling by high throughput sequencing	Arabidopsis thaliana	32	BED FA WIG SRA Run Selector	Julie Ann Law	Apr 26, 2017
GSE63938	Targeted CpG island methylation in human pluripotent stem cells	Methylation profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens	29	BEDGRAPH FA SRA Run Selector	April Elizabeth Williams	Dec 01, 2017
GSE86979	Biogeographic conservation and CO2-dynamics of the cytosine methylome in the globally important cyanobacterium Trichodesmium [WGBS]	Methylation profiling by high throughput sequencing	Trichodesmium Trichodesmium erythraeum 21-75 Trichodesmium erythraeum IMS101 Trichodesmium thiebautii VI-1	11	FA TXT SRA Run Selector	Eric Alva Webb	Mar 01, 2018
GSE113084	RdDM is involved in epigenetic regulation of strawberry fruit ripening	Expression profiling by high throughput sequencing Non-coding RNA profiling by high throughput sequencing Methylation profiling by high throughput sequencing	Fragaria x ananassa	17	BW FA GFF3 TXT SRA Run Selector	yijing zhang	Nov 13, 2018
GSE113105	Comparative multi-omic analyses of Trichinella Pseudospiralis based on a new genome assembly by long-read sequencing	Expression profiling by high throughput sequencing Methylation profiling by high throughput sequencing	Trichinella pseudospiralis	6	FA GFF TXT SRA Run Selector	Desheng Gong	Apr 16, 2019
GSE124427	A comprehensive epigenomic analysis of phenotypically distinguishable, genetically identical female and male Daphnia pulex	Methylation profiling by high throughput sequencing Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Daphnia pulex	31	FA GFF NARROWPEAK TXT SRA Run Selector	Jouni Antero Kvist	Oct 18, 2019
GSE152639	Structure of DNA methyltransferases DNMT3A/DNMT3B bound to a nucleosome [seq]	Methylation profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	synthetic construct	20	BW FA VCF SRA Run Selector	Peter A Jones	Jun 17, 2020
GSE157451	Relative DNA methylation and demethylation efficiencies during postnatal liver development regulate hepatitis B virus biosynthesis	Methylation profiling by high throughput sequencing	Hepatitis B virus Mus musculus	120	FA TXT SRA Run Selector	Mark Maienschein-Cline	Dec 10, 2020
GSE155864	Experimental competition induces immediate and lasting effects on the neurogenome in free-living female birds	Expression profiling by high throughput sequencing Methylation profiling by high throughput sequencing	Tachycineta bicolor	62	FA FNA TSV SRA Run Selector	Kimberly Rosvall	Mar 10, 2021
GSE158737	DNA methylation-mediated modulation of rapid desiccation tolerance acquisition and dehydration stress memory in the resurrection plant Boea hygrometrica	Expression profiling by high throughput sequencing Methylation profiling by high throughput sequencing	Dorcoceras hygrometricum	51	FA XLSX SRA Run Selector	Run-Ze Sun	Jun 08, 2021
GSE158514	Mapping epigenetic divergence in the massive radiation of Lake Malawi cichlid fishes	Expression profiling by high throughput sequencing Methylation profiling by high throughput sequencing	Astatotilapia calliptera Aulonocara stuartgranti Diplotaxodon limnothrissa Maylandia zebra Petrotilapia genalutea Pundamilia nyererei Rhamphochromis longiceps	60	BW FA TXT SRA Run Selector	Grégoire M Vernaz	Aug 19, 2021
GSE172629	Heterogeneous phenotypes of Pten-null hepatocellular carcinoma in hepatitis B virus transgenic mice parallels liver lobule zonal gene expression patterns	Expression profiling by high throughput sequencing Methylation profiling by high throughput sequencing	Mus musculus	20	FA TXT SRA Run Selector	Mark Maienschein-Cline	Jan 05, 2022
GSE155677	Multimodal profiling of the transcriptional regulatory landscape of the developing mouse cortex identifies Neurog2 as a key epigenome remodeler	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Methylation profiling by high throughput sequencing Other	Escherichia coli Mus musculus	36	BED BEDGRAPH BW FA MTX PICKLE TAR TSV TXT SRA Run Selector	Boyan Bonev	Jan 27, 2022
GSE204730	Salinity stress response in chickpea	Expression profiling by high throughput sequencing Methylation profiling by high throughput sequencing Non-coding RNA profiling by high throughput sequencing	Cicer arietinum	20	FA TXT	Rohini Garg	Feb 15, 2023
GSE201629	Depositing centromere repeats induces heritable intragenic heterochromatin establishment and spreading in Arabidopsis	Methylation profiling by high throughput sequencing Non-coding RNA profiling by high throughput sequencing	Arabidopsis thaliana	19	BW FA	Xuehua Zhong	May 31, 2023