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326 series

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Accession	Title	Series type(s)	Organism(s)	Samples	Supplementary	Contact	Release date
Filter		Methylation profiling by high throughput sequencing			CSV
GSE30558	Bisulphite-sequencing of chromatin immunoprecipitated DNA (BisChiP-seq) directly informs methylation status	Genome binding/occupancy profiling by high throughput sequencing Methylation profiling by high throughput sequencing	Homo sapiens	2	BAM BED CSV WIG SRA Run Selector	Mark Robinson	Jan 18, 2012
GSE81436	The ortholog of DDM1 is mainly required for CHG and CG methylation of heterochromatin and is involved in DRM2-mediated CHH methylation that targets mostly genic regions of the rice genome	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Methylation profiling by high throughput sequencing Non-coding RNA profiling by high throughput sequencing	Oryza sativa Japonica Group	17	BAM BW CSV GFF WIG XLS SRA Run Selector	chao zhou	Jun 13, 2016
GSE112479	The RNA helicase DDX6 regulates self-renewal and differentiation of human and mouse stem cells	Expression profiling by high throughput sequencing Methylation profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens	100	BB BED BW CSV TXT	Bruno Di Stefano	Oct 03, 2019
GSE34403	Bisulphite-sequencing of chromatin immunoprecipitated DNA directly informs methylation status of histone-modified DNA	Genome binding/occupancy profiling by high throughput sequencing Methylation profiling by high throughput sequencing Methylation profiling by genome tiling array	Homo sapiens	8	BED CSV WIG	Mark Robinson	Jan 18, 2012
GSE59842	Genome wide DNA methylation of Epstein-Barr virus infected immortalized normal oral keratinocytes	Methylation profiling by high throughput sequencing	Homo sapiens	6	BED CSV SRA Run Selector	Rona S. Scott	Aug 01, 2014
GSE59843	Genome wide DNA methylation and expression profiling of Epstein-Barr virus infected immortalized normal oral keratinocytes	Expression profiling by array Methylation profiling by high throughput sequencing	Homo sapiens	18	BED CEL CHP CSV	Rona S. Scott	Aug 01, 2014
GSE74426	Obesity and Bariatric Surgery Drive Epigenetic Variation of Spermatozoa in Humans	Non-coding RNA profiling by high throughput sequencing Methylation profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens	77	BED CSV XLS SRA Run Selector	Lars Roed Ingerslev	Dec 04, 2015
GSE83438	N6-methyladenosine in Flaviviridae viral RNA genomes regulates infection	Methylation profiling by high throughput sequencing Expression profiling by high throughput sequencing	Homo sapiens	28	BED CSV SRA Run Selector	A McIntyre	Oct 21, 2016
GSE84424	DNA methylome and transcriptome sequencing to define pathways involved in the activation of microglia	Expression profiling by high throughput sequencing Methylation profiling by high throughput sequencing	Mus musculus	6	BED CSV SRA Run Selector	Angela H Ting	Dec 01, 2022
GSE92945	Methylome and transcriptome sequencing to study epigenetic alterations in colon associated fibroblasts from normal, colitis and cancer associated fibroblasts	Expression profiling by high throughput sequencing Methylation profiling by high throughput sequencing	Homo sapiens	21	BED CSV SRA Run Selector	Angela H Ting	Dec 29, 2022
GSE93127	Comprehensive characterization of neutrophil genome topology	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Methylation profiling by high throughput sequencing Other	Mus musculus	51	BED BEDGRAPH CSV TXT SRA Run Selector	Yina Zhu	Feb 06, 2017
GSE95302	DNA structure-specific endonuclease FEN1 as a novel drug target in tamoxifen resistant breast cancer.	Genome binding/occupancy profiling by high throughput sequencing Methylation profiling by high throughput sequencing Expression profiling by high throughput sequencing	Homo sapiens	33	BED CSV SRA Run Selector	Koen Flach	Jun 01, 2020
GSE103663	Characterization and metabolic synthetic lethal testing in a new model of SDH-loss familial pheochromocytoma and paraganglioma	Methylation profiling by high throughput sequencing Expression profiling by high throughput sequencing	Mus musculus	28	BED COV CSV	John Andrew Smestad	Nov 21, 2017
GSE107447	Altered chromosomal topology drives oncogenic programs in SDH-deficient GISTs	Genome binding/occupancy profiling by high throughput sequencing Methylation profiling by high throughput sequencing Expression profiling by high throughput sequencing Other	Homo sapiens	100	BED BW CSV HIC TXT	Yotam Drier	Oct 16, 2019
GSE109545	A novel role of Tet1/2 proteins in cell cycle progression of trophoblast stem cells	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Methylation profiling by high throughput sequencing	Mus musculus	15	BED COV CSV SRA Run Selector	Myriam Hemberger	May 02, 2018
GSE117434	Genes controlling the activation of natural killer lymphocytes are epigenetically remodeled in intestinal cells from germ-free mice	Methylation profiling by high throughput sequencing	Mus musculus	48	BED CSV SRA Run Selector	Lars Roed Ingerslev	Jan 23, 2019
GSE121459	Myc and Dnmt1 impede the pluripotent to totipotent state transition in embryonic stem cell	Expression profiling by high throughput sequencing Methylation profiling by high throughput sequencing Other	Mus musculus	40	BED CSV TAB	Mohamed Nadhir Djekidel	Apr 12, 2019
GSE136419	Control of early B cell development by mRNA N6-methyladenosine	Expression profiling by high throughput sequencing Methylation profiling by high throughput sequencing	Mus musculus	12	BED CSV SRA Run Selector	Ruitu Lyu	Jun 23, 2020
GSE141878	Distinct epigenetic features of tumor-reactive CD8+ T cells in colorectal cancer patients revealed by genome-wide DNA methylation analysis	Expression profiling by high throughput sequencing Methylation profiling by high throughput sequencing	Homo sapiens	73	BED CSV TXT	Sijin Cheng	Dec 12, 2019
GSE148173	Noncoding RNA-mediated DNA methylation directs nucleosome positioning	Methylation profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Arabidopsis thaliana	20	BED CSV SRA Run Selector	Shriya Sethuraman	Apr 06, 2023