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96 series

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Accession	Title	Series type(s)	Organism(s)	Samples	Supplementary	Contact	Release date
Filter		Methylation profiling by high throughput sequencing			CEL
GSE10877	Highly integrated single base resolution maps of the epigenome in Arabidopsis	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by genome tiling array Methylation profiling by array Methylation profiling by high throughput sequencing	Arabidopsis thaliana	16	CEL TXT	Joseph R Ecker	Apr 21, 2008
GSE11839	Differentiation associated changes in gene expression profiles for interstitial cystitis and control urothelial cells	Expression profiling by high throughput sequencing Methylation profiling by high throughput sequencing	Homo sapiens	12	CEL PDF	Deborah Erickson	Sep 05, 2008
GSE17158	Expression and DNA methylation profiling of ntTS and TS cells	Expression profiling by array Methylation profiling by high throughput sequencing	Mus musculus	17	CEL	Mayumi Oda	Jul 17, 2009
GSE21673	Relationship between nucleosome positioning and DNA methylation	Methylation profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Genome binding/occupancy profiling by genome tiling array	Arabidopsis thaliana Homo sapiens	6	CEL TXT	matteo Pellegrini	May 29, 2010
GSE24546	Evaluation of affinity-based genome-wide DNA methylation data: effects of CpG density, amplification bias and copy number variation	Methylation profiling by genome tiling array Methylation profiling by high throughput sequencing Genome variation profiling by SNP array	Homo sapiens	40	CEL MAP TXT SRA Run Selector	Mark Robinson	Oct 08, 2010
GSE24843	Tet1 and hydroxymethylcytosine in transcription and DNA methylation fidelity	Genome binding/occupancy profiling by high throughput sequencing Methylation profiling by high throughput sequencing Expression profiling by array	Mus musculus	32	BED CEL	Kristine Williams	Apr 13, 2011
GSE25899	Paternally-induced transgenerational environmental reprogramming of metabolic gene expression in mammals	Non-coding RNA profiling by high throughput sequencing Methylation profiling by high throughput sequencing Expression profiling by array	Mus musculus	42	BEDGRAPH CEL GPR TXT	naomi habib	Jan 14, 2011
GSE26100	Widespread targeted chromatin remodeling during the initial phase of somatic cell reprogramming	Expression profiling by array Methylation profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	36	CEL TXT WIG	Richard Koche	Jan 03, 2011
GSE27322	de novo DNA Methylation Balances Hematopoietic Stem Cell Self-Renewal and Differentiation	Methylation profiling by high throughput sequencing Expression profiling by array	Mus musculus	10	BAM BED CEL SRA Run Selector	deqiang sun	Sep 30, 2011
GSE28500	Genome-wide Regulation of 5hmC, 5mC and Gene Expression by Tet1 Hydroxylase in Mouse Embryonic Stem Cells	Expression profiling by array Genome binding/occupancy profiling by high throughput sequencing Methylation profiling by high throughput sequencing Expression profiling by high throughput sequencing	Mus musculus	23	BED CEL	Feizhen Wu	Apr 21, 2011
GSE31355	A genome wide methylation map of neuroblastoma cell lines	Methylation profiling by high throughput sequencing Expression profiling by array	Homo sapiens	24	BED CEL WIG	Maté Ongenaert	Sep 13, 2012
GSE32188	5-hydroxymethylcytosine-mediated epigenetic dynamics during neurodevelopment and aging	Methylation profiling by high throughput sequencing Expression profiling by array	Homo sapiens Mus musculus Rattus norvegicus	30	CEL	Keith E Szulwach	Oct 30, 2011
GSE32260	Relationship between DNMT1-RNA interactions, DNA methylation and gene expression	Expression profiling by array Expression profiling by high throughput sequencing Methylation profiling by high throughput sequencing	Homo sapiens	8	BSP CEL GTF WIG	Touati Benoukraf	Dec 01, 2012
GSE33231	Genome wide DNA methylation analysis of leukemia and reprogrammed leukemia cells	Expression profiling by array Methylation profiling by high throughput sequencing	Homo sapiens	16	CEL	Touati Benoukraf	Oct 01, 2012
GSE34267	Acute depletion of Tet1-dependent 5-hydroxymethylcytosine levels impairs LIF/Stat3 signaling and results in loss of embryonic stem cell identity	Expression profiling by array Methylation profiling by high throughput sequencing	Mus musculus	12	BED CEL WIG	Raja Jothi	Jan 04, 2012
GSE36846	Selection of epigenetic variation in Arabidopsis	Methylation profiling by high throughput sequencing Expression profiling by array Genome variation profiling by high throughput sequencing	Arabidopsis thaliana	33	CEL TXT	Christian Heichinger	Sep 01, 2014
GSE38938	Linking DNA Methyltransferases (DNMTs) to Epigenetic Marks and Nucleosome Structure Genome-Wide in Human Tumor Cells	Genome binding/occupancy profiling by high throughput sequencing Expression profiling by array Methylation profiling by high throughput sequencing	Homo sapiens	28	BED CEL	Keith robertson	Oct 19, 2012
GSE39639	Gene expression and 5hmC/5mC state in pluripotent and TSKM-iPS induction cells	Expression profiling by array Methylation profiling by high throughput sequencing	Mus musculus	15	BED CEL	Tao Cai	Mar 18, 2013
GSE40167	5-hmC in the brain: abundance in synaptic genes and differences at the exon-intron boundary	Methylation profiling by genome tiling array Methylation profiling by high throughput sequencing	Homo sapiens Mus musculus	795	BED CEL	Shraddha Pai	Aug 24, 2012
GSE41050	Epigenetic polymorphism and the stochastic formation of differentially methylated regions in normal and cancerous tissues	Genome binding/occupancy profiling by high throughput sequencing Methylation profiling by high throughput sequencing Expression profiling by array	Homo sapiens	35	BW CEL	Gilad Landan	Sep 24, 2012