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343 series

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Accession	Title	Series type(s)	Organism(s)	Samples	Supplementary	Contact	Release date
Filter		Methylation profiling by high throughput sequencing			BIGWIG
GSE79882	Genome-wide map of DNA 5-Hydroxymethylcytosine in cardiomyocytes isolated from E14.5, Neonatal, Adult, pressure-overload (TAC), sh-control and sh-TET2 isolated cardiomyocytes	Methylation profiling by high throughput sequencing	Mus musculus	22	XLSX BIGWIG BED SRA Run Selector	Paolo Kunderfranco	Jun 21, 2016
GSE84897	Genome-wide analysis of DNA hydroxymethylation and methylation during epstein-barr virus infection.	Expression profiling by high throughput sequencing Methylation profiling by high throughput sequencing	Homo sapiens	8	XLSX GTF BIGWIG SRA Run Selector	Masaki Fukuyo	Apr 28, 2017
GSE101905	Transient and permanent reconfiguration of chromatin and transcription factor occupancy drive reprogramming	Genome binding/occupancy profiling by high throughput sequencing Expression profiling by high throughput sequencing Methylation profiling by high throughput sequencing	Mus musculus	85	XLSX TXT BIGWIG BED SRA Run Selector	Ryan Lister	Dec 06, 2017
GSE103924	Topoisomerase VI participates to a chromatin barrier-like function that prevents heterochromatin spreading in euchromatic islands (HTS)	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Methylation profiling by high throughput sequencing	Arabidopsis thaliana	28	XLSX BW BIGWIG SRA Run Selector	Christophe Laloi	Sep 12, 2018
GSE134452	The histone H3G34R mutation disrupts the epigenome via catalytic inactivation of the ASH1 H3K36 methyltransferase	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Methylation profiling by high throughput sequencing	Neurospora crassa	20	XLSX TDF TAB IGV BIGWIG	Elizabeth Toomey Wiles	Oct 19, 2022
GSE178227	YAP induces an oncogenic transcriptional program through TET1-mediated epigenetic remodeling in liver growth and tumorigenesis	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Methylation profiling by high throughput sequencing	Mus musculus	36	XLSX BIGWIG SRA Run Selector	Duojia Pan	May 09, 2022
GSE242398	DNA Methylation-Based High-Resolution Mapping of Long-Distance Chromosomal Interactions in Nucleosome-Depleted Regions (MeDIP)	Methylation profiling by high throughput sequencing	Saccharomyces cerevisiae	66	XLSX BIGWIG	Lu Bai	Sep 05, 2023
GSE136673	Regulation of DNA Methylation at Enhancers by TET2 Finetunes Gene Transcription in ERα-Positive Breast Cancer Cells	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Methylation profiling by high throughput sequencing	Homo sapiens	36	XLS TXT BIGWIG SRA Run Selector	Ruitu Lyu	Jul 09, 2020
GSE66911	In vivo targeting of de novo DNA methylation by histone modifications in yeast and mouse	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Methylation profiling by high throughput sequencing	Mus musculus Saccharomyces cerevisiae	37	WIG BIGWIG	matteo pellegrini	Apr 02, 2015
GSE81222	Erasure of Tet-oxidized 5-methylcytosine by a SRAP nuclease	Genome binding/occupancy profiling by high throughput sequencing Methylation profiling by high throughput sequencing Expression profiling by high throughput sequencing	Mus musculus	31	WIG TXT BIGWIG BEDGRAPH BED SRA Run Selector	Douglas Edmund Feldman	Oct 10, 2017
GSE150527	Comprehensive epigenomic profiling of human alveolar epithelial differentiation identifies key epigenetic states and transcription factor co-regulatory networks for maintenance of distal lung identity	Methylation profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Expression profiling by high throughput sequencing Other	Homo sapiens	48	WIG TAB RDS BW BIGWIG SRA Run Selector	Crystal N Marconett	Oct 27, 2021
GSE148185	Three-dimensional chromatin interactions remain stable upon CAG/CTG repeat expansion	Other Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Methylation profiling by high throughput sequencing	Homo sapiens	275	VCF TXT BIGWIG BEDGRAPH	Gustavo Agustín Ruiz Buendía	Apr 07, 2020
GSE217482	Immunoediting instructs tumor metabolic reprogramming to support immune evasion	Genome binding/occupancy profiling by high throughput sequencing Genome variation profiling by high throughput sequencing Expression profiling by high throughput sequencing Methylation profiling by high throughput sequencing	Mus musculus	45	VCF TXT BIGWIG BED	Ping-Chih Ho	Nov 15, 2022
GSE48580	Genome-wide methylation maps for Proliferating and Senescent cells	Methylation profiling by high throughput sequencing	Homo sapiens	9	TXT BIGWIG BED SRA Run Selector	Peter D. Adams	Nov 25, 2013
GSE51902	Control of 5mC and 5hmC by TET dioxygenases in human embryonic carcinoma cells [MBD-Seq]	Methylation profiling by high throughput sequencing	Homo sapiens	14	TXT BIGWIG BED SRA Run Selector	Keith D Robertson	Jun 14, 2014
GSE51903	Control of 5mC and 5hmC by TET dioxygenases in human embryonic carcinoma cells	Expression profiling by array Methylation profiling by high throughput sequencing	Homo sapiens	22	TXT CEL BIGWIG BED	Keith D Robertson	Jun 14, 2014
GSE54842	Acute depletion redefines the division of labor among DNA methyltransferases in methylating the human genome [MBD-seq]	Methylation profiling by high throughput sequencing	Homo sapiens	3	TXT BIGWIG BED SRA Run Selector	Keith D Robertson	Oct 20, 2014
GSE54843	Acute depletion redefines the division of labor among DNA methyltransferases in methylating the human genome	Methylation profiling by genome tiling array Methylation profiling by high throughput sequencing Expression profiling by array	Homo sapiens	56	TXT CEL BIGWIG BED	Keith D Robertson	Oct 20, 2014
GSE55124	Genome-wide methylation maps for untreated and Aza treated AML3 cells	Methylation profiling by high throughput sequencing	Homo sapiens	4	TXT BIGWIG SRA Run Selector	Peter Adams	Jul 01, 2014
GSE55125	Aza treated AML3 cells	Expression profiling by high throughput sequencing Methylation profiling by high throughput sequencing	Homo sapiens	10	TXT BIGWIG	Peter Adams	Jul 01, 2014