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Accession	Title	Series type(s)	Organism(s)	Samples	Supplementary	Contact	Release date
Filter		Methylation profiling by high throughput sequencing			BEDGRAPH
GSE211787	scNMT-seq of the adult NSC lineage - MAB-seq	Methylation profiling by high throughput sequencing	Mus musculus	6	BEDGRAPH	Ana Martin-Villalba	Sep 16, 2022
GSE50486	rrp6l1-2 project	Expression profiling by high throughput sequencing Methylation profiling by high throughput sequencing Non-coding RNA profiling by high throughput sequencing	Arabidopsis thaliana	5	BEDGRAPH WIG SRA Run Selector	Jian-Kang Zhu	Apr 16, 2014
GSE90958	ncRNA transcription-induced changes in nuclear architecture directs with high precision enhancer-promoter interaction	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Other Methylation profiling by high throughput sequencing	Mus musculus	80	BED BEDGRAPH TXT XLSX SRA Run Selector	Kees Murre	Sep 18, 2017
GSE48026	mRNA-Seq of asi1-1, wild-type and MethlyC-Seq of asi1-1	Expression profiling by high throughput sequencing Methylation profiling by high throughput sequencing	Arabidopsis thaliana	3	BEDGRAPH WIG SRA Run Selector	Jian-Kang Zhu	Sep 06, 2013
GSE203571	m6a methylation drives IMP1 regulation during human neuronal differentiation.	Expression profiling by high throughput sequencing Other Methylation profiling by high throughput sequencing	Homo sapiens	48	BED BEDGRAPH TAB	Pierre Klein	Apr 13, 2024
GSE167075	m6A modification in SARS-CoV-2 virus regulates host cell innate immune response	Expression profiling by high throughput sequencing Methylation profiling by high throughput sequencing	Chlorocebus aethiops Homo sapiens Severe acute respiratory syndrome coronavirus 2	16	BEDGRAPH BW XLSX SRA Run Selector	Na Li	Apr 27, 2021
GSE68396	hESC neural differentiation	Methylation profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Expression profiling by high throughput sequencing	Homo sapiens	21	BEDGRAPH TXT	Naihe Jing	Apr 19, 2016
GSE102616	ZFX acts as a transcriptional activator in multiple types of human tumors by binding downstream of transcription start sites at the majority of CpG island promoters	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Methylation profiling by high throughput sequencing	Homo sapiens	47	BEDGRAPH TXT SRA Run Selector	Suhn K Rhie	Jan 24, 2018
GSE77438	ZFP57 maintains the parent-of-origin-specific expression of the imprinted genes and differentially affects non-imprinted targets in mouse embryonic stem cells (BS-seq and RRBS)	Methylation profiling by high throughput sequencing	Mus musculus	7	BEDGRAPH SRA Run Selector	Marco Cammisa	Jun 04, 2016
GSE77444	ZFP57 maintains the parent-of-origin-specific expression of the imprinted genes and differentially affects non-imprinted targets in mouse embryonic stem cells	Expression profiling by high throughput sequencing Methylation profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	23	BED BEDGRAPH	Marco Cammisa	Jun 04, 2016
GSE125482	Wild-type and Math5-/- mouse dLGN (dorsolateral geniculate nucleus) at postnatal day time points	Methylation profiling by high throughput sequencing Expression profiling by high throughput sequencing	Mus musculus	12	BEDGRAPH	Xiguang Xu	Mar 06, 2019
GSE113946	Widespread transposable element-driven oncogene expression in cancers	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Methylation profiling by high throughput sequencing	Homo sapiens	6	BEDGRAPH BIGWIG COV SRA Run Selector	Daofeng Li	Feb 05, 2019
GSE139941	Widespread dynamic DNA demethylation in response to heat stress in Arabidopsis	Methylation profiling by high throughput sequencing	Arabidopsis thaliana	21	BEDGRAPH SRA Run Selector	Urszula Korotko	Nov 06, 2019
GSE117187	Whole-genome bisulfite sequencing of wild-type and thick aleurone 2-1 (ta2-1) mutant in rice	Methylation profiling by high throughput sequencing	Oryza sativa	3	BEDGRAPH SRA Run Selector	Jinxin Liu	Nov 14, 2018
GSE41923	Whole-genome bisulfite sequencing of two distinct interconvertible DNA methylomes of mouse embryonic stem cells	Methylation profiling by high throughput sequencing	Mus musculus	14	BEDGRAPH SRA Run Selector	Hendrik Marks	Jul 12, 2013
GSE222669	Whole-genome bisulfite sequencing analysis for intestinal budding organoids derived from induced or tissue-derived intestinal stem cells, and for mouse embryonic fibroblasts	Methylation profiling by high throughput sequencing	Mus musculus	8	BEDGRAPH	Atsushi Suzuki	Dec 19, 2023
GSE185571	Whole-genome DNA methylation landscapes of control and heat-stressed Linum usitatissimum seedlings.	Methylation profiling by high throughput sequencing	Linum usitatissimum	4	BEDGRAPH TXT SRA Run Selector	Dipnarayan Saha	Apr 01, 2022
GSE161166	Whole-genome DNA methylation analysis in hydrogen peroxide overproducing transgenic tobacco	Methylation profiling by high throughput sequencing	Nicotiana tabacum	6	BEDGRAPH SRA Run Selector	Luis F. Garcia-Ortega	Jan 19, 2021
GSE104245	Whole genome methylation profiling in HepG2 cells using WGBS (Whole Genome Bisulfite Sequencing)	Methylation profiling by high throughput sequencing	Homo sapiens	2	BEDGRAPH COV	Eric M Mendenhall	Dec 30, 2021
GSE72265	Whole genome bisulfite sequencing of sperm from a mouse heterozygous for a mutation in Setdb1 (MommeD13) and a wildtype mouse.	Methylation profiling by high throughput sequencing	Mus musculus	2	BEDGRAPH SRA Run Selector	Harald Oey	Feb 09, 2017