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489 series

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Accession	Title	Series type(s)	Organism(s)	Samples	Supplementary	Contact	Release date
Filter		Methylation profiling by high throughput sequencing			BEDGRAPH
GSE25689	Cell Type-Specific DNA Methylation at Intragenic CpG Islands in the Immune System	Expression profiling by array Genome binding/occupancy profiling by high throughput sequencing Methylation profiling by high throughput sequencing	Mus musculus	28	BEDGRAPH	Adrian Bird	May 23, 2011
GSE25899	Paternally-induced transgenerational environmental reprogramming of metabolic gene expression in mammals	Expression profiling by array Methylation profiling by high throughput sequencing Non-coding RNA profiling by high throughput sequencing	Mus musculus	42	BEDGRAPH CEL GPR TXT	naomi habib	Jan 14, 2011
GSE44278	Redistribution of H3K27me3 upon DNA hypomethylation results in de-repression of polycomb-target genes	Expression profiling by array Expression profiling by high throughput sequencing Genome binding/occupancy profiling by genome tiling array Genome binding/occupancy profiling by high throughput sequencing Methylation profiling by high throughput sequencing	Mus musculus	35	BEDGRAPH PAIR	James P Reddington	Feb 12, 2013
GSE51868	HEK293 cells (HEK293-CT) and HEK293 cells stably over-expressing the BAHD1 gene (HEK-BAHD1)	Expression profiling by array Genome binding/occupancy profiling by high throughput sequencing Methylation profiling by high throughput sequencing	Homo sapiens	30	BEDGRAPH CEL TXT WIG	Helene Bierne	Dec 11, 2015
GSE52304	Premature termination of in vivo reprogramming leads to cancer development through altered epigenetic regulation	Expression profiling by array Methylation profiling by high throughput sequencing	Mus musculus	28	BEDGRAPH CEL	Yasuhiro Yamada	Feb 13, 2014
GSE71475	Epigenetic perturbations by Arg882-mutated DNMT3A potentiate aberrant stem cell gene expression program and acute leukemia development	Expression profiling by array Genome binding/occupancy profiling by high throughput sequencing Methylation profiling by high throughput sequencing	Mus musculus	46	BEDGRAPH BIGBED CEL	Rui Lu	Jun 23, 2016
GSE76337	Novel contribution of acetylated histone variant H2A.Z in activation of neo-enhancers in prostate cancer	Expression profiling by array Genome binding/occupancy profiling by high throughput sequencing Methylation profiling by high throughput sequencing	Homo sapiens	50	BED BEDGRAPH BW CEL	Fatima Valdes Mora	Sep 05, 2017
GSE79771	DNA methylation is required for chromatin binding by Mbd2 and Mbd3 in ES cells	Expression profiling by array Genome binding/occupancy profiling by high throughput sequencing Methylation profiling by high throughput sequencing	Mus musculus	78	BEDGRAPH TXT	Sarah J Hainer	Nov 15, 2016
GSE84165	Derivation of ground-state female ESCs maintaining gamete-derived DNA methylation	Expression profiling by array Methylation profiling by high throughput sequencing	Mus musculus	93	BEDGRAPH CEL	Yasuhiro Yamada	Jul 27, 2017
GSE86376	A new axis linking diabetes to cancer: Glucose regulates tumor suppressor TET2 and 5hmC through AMPK	Expression profiling by array Methylation profiling by high throughput sequencing	Homo sapiens	12	BEDGRAPH CEL NARROWPEAK	Di Wu	Jul 15, 2018
GSE117383	SIRT1 Activation Disrupts Maintenance of Myelodysplastic Syndrome Stem and Progenitor Cells by Restoring TET2 Function	Expression profiling by array Methylation profiling by high throughput sequencing	Homo sapiens	16	BEDGRAPH NARROWPEAK TXT	Sun Jie	Aug 13, 2018
GSE120592	Gene expression, chromatin state and DNA methylome in retinal pigment epithelium (RPE)	Expression profiling by array Genome binding/occupancy profiling by high throughput sequencing Methylation profiling by high throughput sequencing	Mus musculus	15	BED BEDGRAPH TXT	Dmitry Ivanov	Mar 19, 2019
GSE122337	Development and epigenetic plasticity of murine Müller glia	Expression profiling by array Genome binding/occupancy profiling by high throughput sequencing Methylation profiling by high throughput sequencing	Mus musculus	33	BED BEDGRAPH TXT	Dmitry Ivanov	Jul 23, 2019
GSE145953	Chromatin Protein PC4 Orchestrates B Cell Differentiation by Collaborating with IKAROS and IRF4	Expression profiling by array Genome binding/occupancy profiling by high throughput sequencing Methylation profiling by high throughput sequencing	Mus musculus	18	BED BEDGRAPH TXT	Kyoko Ochiai	Dec 22, 2020
GSE199214	The steroid hormone estriol (E3) regulates epigenetic programming of fetal mouse brain and reproductive tract	Expression profiling by array Genome binding/occupancy profiling by high throughput sequencing Methylation profiling by genome tiling array Methylation profiling by high throughput sequencing	Homo sapiens Mus musculus	24	BEDGRAPH CEL CHP GFF	Yuping Zhou	Mar 31, 2022
GSE20898	Genome-wide Analyses of Transcription Factor GATA3-Mediated Gene Regulation in Distinct T Cell Types	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Methylation profiling by high throughput sequencing	Mus musculus	53	BED BEDGRAPH RPKM SRA Run Selector	Brian J Abraham	Aug 26, 2011
GSE31577	Genome-wide analysis of global and caste-specific DNA methylation in two ant species: Camponotus floridanus and Harpegnathos saltator	Expression profiling by high throughput sequencing Methylation profiling by high throughput sequencing Non-coding RNA profiling by high throughput sequencing	Camponotus floridanus Harpegnathos saltator	47	BEDGRAPH FA	Hong zhi Cao	Aug 09, 2012
GSE35238	5-hydroxymethylcytosine is linked with expression of brain-specific protein-coding genes but not brain-specific microRNA host genes	Expression profiling by high throughput sequencing Methylation profiling by high throughput sequencing	Homo sapiens	6	BED BEDGRAPH	Sheroy Minocherhomji	Sep 01, 2015
GSE35856	Maternal Influence on Exonic CpG Island Methylation in the Developing Hippocampus	Expression profiling by high throughput sequencing Methylation profiling by array Methylation profiling by high throughput sequencing	Mus musculus	29	BEDGRAPH PAIR WIG	Miklos Toth	Feb 04, 2013
GSE42880	MeCP2 binds to 5hmC enriched within active genes and accessible chromatin in the nervous system	Expression profiling by high throughput sequencing Methylation profiling by high throughput sequencing Other	Mus musculus	50	BEDGRAPH WIG SRA Run Selector	Marian Mellen	Jan 14, 2013