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475 series

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Accession	Title	Series type(s)	Organism(s)	Samples	Supplementary	Contact	Release date
Filter		Methylation profiling by high throughput sequencing			BEDGRAPH
GSE82063	Comprehensive DNA methylation analysis of the Aedes aegypti genome	Methylation profiling by high throughput sequencing	Aedes aegypti	1	BEDGRAPH SRA Run Selector	Cassandra Falckenhayn	Nov 30, 2017
GSE218877	5-methyl cytosine profile of Anthoceros agrestis	Methylation profiling by high throughput sequencing	Anthoceros agrestis	2	BEDGRAPH TXT	Tetsuya Hisanaga	Nov 10, 2023
GSE218880	5-methyl cytosine profile and chromatin profile of Anthoceros agrestis	Methylation profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Anthoceros agrestis	20	BEDGRAPH BROADPEAK BW TXT	Tetsuya Hisanaga	Nov 10, 2023
GSE54727	Genome-wide profiling of H3K4me3, H3K27me3 H3K27me1 and 5mC enrichment and mRNA levels in young leaves of Arabidopsis lyrata	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Methylation profiling by high throughput sequencing	Arabidopsis lyrata	12	BED BEDGRAPH TXT SRA Run Selector	François ROUDIER	Feb 03, 2015
GSE14570	Extensive demethylation of repetitive elements during seed development underlies gene imprinting	Methylation profiling by genome tiling array Methylation profiling by high throughput sequencing	Arabidopsis thaliana	10	BEDGRAPH GFF PAIR TXT SRA Run Selector	Jorja Henikoff	Jun 12, 2009
GSE48026	mRNA-Seq of asi1-1, wild-type and MethlyC-Seq of asi1-1	Expression profiling by high throughput sequencing Methylation profiling by high throughput sequencing	Arabidopsis thaliana	3	BEDGRAPH WIG SRA Run Selector	Jian-Kang Zhu	Sep 06, 2013
GSE50486	rrp6l1-2 project	Expression profiling by high throughput sequencing Methylation profiling by high throughput sequencing Non-coding RNA profiling by high throughput sequencing	Arabidopsis thaliana	5	BEDGRAPH WIG SRA Run Selector	Jian-Kang Zhu	Apr 16, 2014
GSE51764	Arabidopsis EDM2 Promotes IBM1 Distal Polyadenylation and Regulates Genome DNA Methylation Pattern	Methylation profiling by high throughput sequencing Expression profiling by high throughput sequencing	Arabidopsis thaliana	4	BEDGRAPH WIG	Lan Yang	Oct 29, 2013
GSE52762	Arabidopsis Root Methylation and Root Nucleosome Positioning	Methylation profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Arabidopsis thaliana	3	BEDGRAPH SRA Run Selector	matteo pellegrini	Feb 11, 2014
GSE54894	Genome-wide profiling of H3K27me1 and 5mC enrichment in young leaves of Arabidopsis thaliana	Genome binding/occupancy profiling by high throughput sequencing Methylation profiling by high throughput sequencing	Arabidopsis thaliana	6	BED BEDGRAPH SRA Run Selector	François ROUDIER	Feb 03, 2015
GSE62801	The SNF2 and RING domain proteins FRG1 and 2 are required for RNA-directed DNA methylation in Arabidopsis	Expression profiling by high throughput sequencing Methylation profiling by high throughput sequencing Non-coding RNA profiling by high throughput sequencing	Arabidopsis thaliana	25	BEDGRAPH TXT WIG	Hume Stroud	Nov 25, 2014
GSE78836	Arabidopsis AtMORC4 and AtMORC7 form Nuclear Bodies and Repress a Large Number of Protein-Coding Genes	Expression profiling by high throughput sequencing Methylation profiling by high throughput sequencing	Arabidopsis thaliana	32	BEDGRAPH TXT SRA Run Selector	C. Jake Harris	May 11, 2016
GSE83802	The DNA demethylase ROS1 targets genomic regions with distinct chromatin modifications	Methylation profiling by high throughput sequencing Non-coding RNA profiling by high throughput sequencing	Arabidopsis thaliana	16	BEDGRAPH WIG	Jian-Kang Zhu	Nov 01, 2016
GSE84014	Mutation of S-adenosyl-methionine synthetase 3 (SAMS3) releases transcriptional silencing by reducing DNA and histone methylation in Arabidopsis	Expression profiling by high throughput sequencing Methylation profiling by high throughput sequencing	Arabidopsis thaliana	6	BEDGRAPH XLSX SRA Run Selector	Jinkui Cheng	Jun 21, 2018
GSE85975	DNA methylation dynamics during early plant life	Methylation profiling by high throughput sequencing Non-coding RNA profiling by high throughput sequencing	Arabidopsis thaliana	5	BEDGRAPH GFF SRA Run Selector	Daniel Bouyer	Aug 23, 2017
GSE89318	ChIP-seq data for HDP2 transgenic line	Methylation profiling by high throughput sequencing	Arabidopsis thaliana	4	BEDGRAPH SRA Run Selector	Jian-Kang Zhu	Dec 29, 2016
GSE89320	A Pair of Transposon-derived Proteins Function in A Histone Acetyltransferase Complex for Active DNA Demethylation	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Methylation profiling by high throughput sequencing	Arabidopsis thaliana	16	BEDGRAPH TDF WIG	Jian-Kang Zhu	Dec 29, 2016
GSE89433	SAC3B, a central component of the mRNA export complex TREX-2, is required for prevention of epigenetic gene silencing in Arabidopsis	Expression profiling by high throughput sequencing Methylation profiling by high throughput sequencing Non-coding RNA profiling by high throughput sequencing	Arabidopsis thaliana	10	BEDGRAPH WIG SRA Run Selector	Jian-Kang Zhu	Nov 02, 2016
GSE98214	Peroxisomal β-oxidation regulates histone acetylation and DNA methylation in Arabidopsis	Expression profiling by high throughput sequencing Methylation profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Arabidopsis thaliana	35	BEDGRAPH BW XLS SRA Run Selector	Yusheng Zhao	Apr 25, 2018
GSE98655	A protein complex regulates RNA processing of intronic heterochromatin-containing genes in Arabidopsis	Expression profiling by high throughput sequencing Methylation profiling by high throughput sequencing	Arabidopsis thaliana	14	BEDGRAPH WIG SRA Run Selector	Jian-Kang Zhu	Aug 17, 2017