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1020 series

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Accession	Title	Series type(s)	Organism(s)	Samples	Supplementary	Contact	Release date
Filter		Methylation profiling by high throughput sequencing			BED
GSE24843	Tet1 and hydroxymethylcytosine in transcription and DNA methylation fidelity	Expression profiling by array Genome binding/occupancy profiling by high throughput sequencing Methylation profiling by high throughput sequencing	Mus musculus	32	BED CEL	Kristine Williams	Apr 13, 2011
GSE27322	de novo DNA Methylation Balances Hematopoietic Stem Cell Self-Renewal and Differentiation	Expression profiling by array Methylation profiling by high throughput sequencing	Mus musculus	10	BAM BED CEL SRA Run Selector	deqiang sun	Sep 30, 2011
GSE28500	Genome-wide Regulation of 5hmC, 5mC and Gene Expression by Tet1 Hydroxylase in Mouse Embryonic Stem Cells	Expression profiling by array Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Methylation profiling by high throughput sequencing	Mus musculus	23	BED CEL	Feizhen Wu	Apr 21, 2011
GSE31355	A genome wide methylation map of neuroblastoma cell lines	Expression profiling by array Methylation profiling by high throughput sequencing	Homo sapiens	24	BED CEL WIG	Maté Ongenaert	Sep 13, 2012
GSE32487	Gene expression and DNA methylation of lung tumors in Dnmt3a deficient vs. WT mice	Expression profiling by array Methylation profiling by high throughput sequencing	Mus musculus	17	BED TXT	Qing Gao	Oct 26, 2011
GSE34267	Acute depletion of Tet1-dependent 5-hydroxymethylcytosine levels impairs LIF/Stat3 signaling and results in loss of embryonic stem cell identity	Expression profiling by array Methylation profiling by high throughput sequencing	Mus musculus	12	BED CEL WIG	Raja Jothi	Jan 04, 2012
GSE38938	Linking DNA Methyltransferases (DNMTs) to Epigenetic Marks and Nucleosome Structure Genome-Wide in Human Tumor Cells	Expression profiling by array Genome binding/occupancy profiling by high throughput sequencing Methylation profiling by high throughput sequencing	Homo sapiens	28	BED CEL	Keith robertson	Oct 19, 2012
GSE39639	Gene expression and 5hmC/5mC state in pluripotent and TSKM-iPS induction cells	Expression profiling by array Methylation profiling by high throughput sequencing	Mus musculus	15	BED CEL	Tao Cai	Mar 18, 2013
GSE44644	Dnmt3L-dependent regulation of DNA methylation promotes stem cells differentiation toward primitive germinal cells	Expression profiling by array Methylation profiling by high throughput sequencing	Mus musculus	14	BED	Francesco Neri	Sep 27, 2013
GSE47592	5-hydroxymethylcytosine marks promoters in colon that resist hypermethylation in cancer	Expression profiling by array Genome binding/occupancy profiling by high throughput sequencing Methylation profiling by array Methylation profiling by high throughput sequencing	Homo sapiens	137	BED	Chandra Chilamakuri	Feb 03, 2015
GSE49294	H2A.B facilitates transcription at methylated CpG Loci	Expression profiling by array Genome binding/occupancy profiling by high throughput sequencing Methylation profiling by high throughput sequencing	Mus musculus	8	BED CEL	Yibin Chen	Dec 24, 2013
GSE49767	Deterministic direct reprogramming of somatic cells to pluripotency	Expression profiling by array Genome binding/occupancy profiling by high throughput sequencing Methylation profiling by high throughput sequencing	Mus musculus	71	BED CEL TXT	Asaf Zviran	Sep 12, 2013
GSE51903	Control of 5mC and 5hmC by TET dioxygenases in human embryonic carcinoma cells	Expression profiling by array Methylation profiling by high throughput sequencing	Homo sapiens	22	BED BIGWIG CEL TXT	Keith D Robertson	Jun 14, 2014
GSE52824	Derivation of novel human ground state naïve pluripotent stem cells.	Expression profiling by array Genome binding/occupancy profiling by high throughput sequencing Methylation profiling by high throughput sequencing	Homo sapiens Mus musculus	71	BED CEL TXT	Noa Novershtern	Nov 29, 2013
GSE54150	Pregnancy-associated alterations in DNA methylation patterns of mammary epithelial stem cells	Expression profiling by array Methylation profiling by high throughput sequencing	Mus musculus	56	BED CEL	Kendell Clement	Jan 22, 2015
GSE54843	Acute depletion redefines the division of labor among DNA methyltransferases in methylating the human genome	Expression profiling by array Methylation profiling by genome tiling array Methylation profiling by high throughput sequencing	Homo sapiens	56	BED BIGWIG CEL TXT	Keith D Robertson	Oct 20, 2014
GSE58882	Coordinated epigenetic remodelling occurs during early breast carcinogenesis	Expression profiling by array Genome binding/occupancy profiling by array Genome binding/occupancy profiling by high throughput sequencing Methylation profiling by high throughput sequencing	Homo sapiens	72	BED CEL TXT	Warwick James Locke	May 09, 2015
GSE59591	Loss of TET2 in hematopoietic cells leads to DNA hypermethylation of active enhancers and induction of leukemogenesis	Expression profiling by array Genome binding/occupancy profiling by high throughput sequencing Methylation profiling by high throughput sequencing	Mus musculus	53	BED BIGWIG CEL TXT	Kasper Dindler Rasmussen	Apr 22, 2015
GSE59843	Genome wide DNA methylation and expression profiling of Epstein-Barr virus infected immortalized normal oral keratinocytes	Expression profiling by array Methylation profiling by high throughput sequencing	Homo sapiens	18	BED CEL CHP CSV	Rona S. Scott	Aug 01, 2014
GSE63638	The IDH2 mutation cooperates with the NPM1 mutation to activate Hoxa9/Meis1 and hypoxia pathways in acute myeloid leukemia	Expression profiling by array Methylation profiling by high throughput sequencing	Mus musculus	22	BED CEL	yoko ogawara	Mar 25, 2015