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Accession	Title	Series type(s)	Organism(s)	Samples	Supplementary	Contact	Release date
Filter		Methylation profiling by high throughput sequencing
GSE14966	Distinct DNA methylation patterns characterize differentiated human embryonic stem cells and developing human fetal liver	Expression profiling by array Methylation profiling by high throughput sequencing	Homo sapiens	32	TXT	Rami Rauch	Mar 06, 2009
GSE17158	Expression and DNA methylation profiling of ntTS and TS cells	Expression profiling by array Methylation profiling by high throughput sequencing	Mus musculus	17	CEL	Mayumi Oda	Jul 17, 2009
GSE24843	Tet1 and hydroxymethylcytosine in transcription and DNA methylation fidelity	Expression profiling by array Genome binding/occupancy profiling by high throughput sequencing Methylation profiling by high throughput sequencing	Mus musculus	32	BED CEL	Kristine Williams	Apr 13, 2011
GSE25689	Cell Type-Specific DNA Methylation at Intragenic CpG Islands in the Immune System	Expression profiling by array Genome binding/occupancy profiling by high throughput sequencing Methylation profiling by high throughput sequencing	Mus musculus	28	BEDGRAPH	Adrian Bird	May 23, 2011
GSE25899	Paternally-induced transgenerational environmental reprogramming of metabolic gene expression in mammals	Expression profiling by array Methylation profiling by high throughput sequencing Non-coding RNA profiling by high throughput sequencing	Mus musculus	42	BEDGRAPH CEL GPR TXT	naomi habib	Jan 14, 2011
GSE26100	Widespread targeted chromatin remodeling during the initial phase of somatic cell reprogramming	Expression profiling by array Genome binding/occupancy profiling by high throughput sequencing Methylation profiling by high throughput sequencing	Mus musculus	36	CEL TXT WIG	Richard Koche	Jan 03, 2011
GSE27322	de novo DNA Methylation Balances Hematopoietic Stem Cell Self-Renewal and Differentiation	Expression profiling by array Methylation profiling by high throughput sequencing	Mus musculus	10	BAM BED CEL SRA Run Selector	deqiang sun	Sep 30, 2011
GSE27619	Deep sequencing reveals distinct patterns of DNA methylation and transcript isoform regulation in prostate cancer	Expression profiling by array Expression profiling by high throughput sequencing Methylation profiling by genome tiling array Methylation profiling by high throughput sequencing	Homo sapiens	39	BAM TXT	Jung Kim	May 03, 2011
GSE28500	Genome-wide Regulation of 5hmC, 5mC and Gene Expression by Tet1 Hydroxylase in Mouse Embryonic Stem Cells	Expression profiling by array Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Methylation profiling by high throughput sequencing	Mus musculus	23	BED CEL	Feizhen Wu	Apr 21, 2011
GSE31355	A genome wide methylation map of neuroblastoma cell lines	Expression profiling by array Methylation profiling by high throughput sequencing	Homo sapiens	24	BED CEL WIG	Maté Ongenaert	Sep 13, 2012
GSE32188	5-hydroxymethylcytosine-mediated epigenetic dynamics during neurodevelopment and aging	Expression profiling by array Methylation profiling by high throughput sequencing	Homo sapiens Mus musculus Rattus norvegicus	30	CEL	Keith E Szulwach	Oct 30, 2011
GSE32260	Relationship between DNMT1-RNA interactions, DNA methylation and gene expression	Expression profiling by array Expression profiling by high throughput sequencing Methylation profiling by high throughput sequencing	Homo sapiens	8	BSP CEL GTF WIG	Touati Benoukraf	Dec 01, 2012
GSE32487	Gene expression and DNA methylation of lung tumors in Dnmt3a deficient vs. WT mice	Expression profiling by array Methylation profiling by high throughput sequencing	Mus musculus	17	BED TXT	Qing Gao	Oct 26, 2011
GSE33231	Genome wide DNA methylation analysis of leukemia and reprogrammed leukemia cells	Expression profiling by array Methylation profiling by high throughput sequencing	Homo sapiens	16	CEL	Touati Benoukraf	Oct 01, 2012
GSE34129	Dramatic effects of social behavior on gene regulation in rhesus macaques	Expression profiling by array Methylation profiling by high throughput sequencing	Homo sapiens Macaca mulatta	126		Jenny Tung	Feb 01, 2012
GSE34267	Acute depletion of Tet1-dependent 5-hydroxymethylcytosine levels impairs LIF/Stat3 signaling and results in loss of embryonic stem cell identity	Expression profiling by array Methylation profiling by high throughput sequencing	Mus musculus	12	BED CEL WIG	Raja Jothi	Jan 04, 2012
GSE36846	Selection of epigenetic variation in Arabidopsis	Expression profiling by array Genome variation profiling by high throughput sequencing Methylation profiling by high throughput sequencing	Arabidopsis thaliana	33	CEL TXT	Christian Heichinger	Sep 01, 2014
GSE37022	Genome-Wide Analysis of Acute Myeloid Leukemia Reveals Leukemia-Specific Methylome and Subtype-Specific Hypomethylation of Repeats	Expression profiling by array Methylation profiling by high throughput sequencing	Homo sapiens	22	GFF WIG	Jacek Dariusz Marzec	Apr 03, 2012
GSE37625	V/SVZ (ventricular/subventricular zone) tissue and CP (cortical plate) tissue at E16	Expression profiling by array Methylation profiling by high throughput sequencing	Mus musculus	10	TXT XLS	Itsuki Ajioka	Jan 01, 2014
GSE38938	Linking DNA Methyltransferases (DNMTs) to Epigenetic Marks and Nucleosome Structure Genome-Wide in Human Tumor Cells	Expression profiling by array Genome binding/occupancy profiling by high throughput sequencing Methylation profiling by high throughput sequencing	Homo sapiens	28	BED CEL	Keith robertson	Oct 19, 2012