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293 series

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Accession	Title	Series type(s)	Organism(s)	Samples	Supplementary	Contact	Release date
Filter	Platform: GPL19057	Methylation profiling by high throughput sequencing
GSE60605	An alternative pluripotent state confers interspecies chimaeric competency	Expression profiling by array Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Methylation profiling by high throughput sequencing	Homo sapiens Macaca mulatta Mus musculus Pan troglodytes	42	BIGWIG CEL TSV	Christopher Benner	May 06, 2015
GSE107957	Hematopoietic stem cell expansion through suppression of YTHDF2-mediated m6A-marked mRNA decay	Expression profiling by high throughput sequencing Other Methylation profiling by high throughput sequencing	Homo sapiens Mus musculus	27	BW	Madelaine Gogol	Aug 17, 2018
GSE112276	Transcriptome Mapping of Internal N7-methylguanosine Methylome in Mammalian mRNA	Methylation profiling by high throughput sequencing Other	Homo sapiens Mus musculus	104	BED FPKM_TRACKING TXT XLSX SRA Run Selector	Li-Sheng Zhang	Apr 26, 2019
GSE112525	DNA methylation in neurons from post-mortem brains in schizophrenia and bipolar disorder	Expression profiling by high throughput sequencing Methylation profiling by high throughput sequencing Methylation profiling by array Genome variation profiling by SNP array	Homo sapiens Mus musculus	332	IDAT TXT	Shraddha Pai	May 03, 2019
GSE112554	Highly scalable generation of DNA methylation profiles in single cells	Methylation profiling by high throughput sequencing	Homo sapiens Mus musculus	6	BED SRA Run Selector	Ryan M Mulqueen	Apr 12, 2018
GSE121671	Tet inactivation disrupts YY1 binding and long-range chromatin interactions to cause developmental defects in embryonic heart	Methylation profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Expression profiling by high throughput sequencing Other	Homo sapiens Mus musculus	23	BW HIC TXT SRA Run Selector	Jia Li	Aug 07, 2019
GSE127247	Control of noncoding RNA production and histone levels by a 5’ tRNA fragment	Expression profiling by high throughput sequencing Methylation profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Other	Homo sapiens Mus musculus	48	BED XLSX SRA Run Selector	Mike Levine	Jan 17, 2020
GSE130119	MAFG-driven astrocytes promote CNS inflammation	Methylation profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Other Expression profiling by high throughput sequencing	Homo sapiens Mus musculus	163	BEDGRAPH CSV TXT	Michael Wheeler	Feb 12, 2020
GSE131678	A probabilistic framework for cellular lineage reconstruction using integrated single-cell 5-hydroxymethylcytosine and genomic DNA sequencing	Methylation profiling by high throughput sequencing	Homo sapiens Mus musculus	16	TXT SRA Run Selector	Siddharth Dey	Jul 08, 2021
GSE136010	Epigenomic analysis of Parkinson's disease neurons identifies TET2 loss as neuroprotective	Expression profiling by high throughput sequencing Methylation profiling by high throughput sequencing	Homo sapiens Mus musculus	107	BED TXT	Lee Marshall	Jun 19, 2020
GSE139984	Strand-specific single-cell methylomics reveals distinct modes of DNA demethylation dynamics in preimplantation mouse and human embryos	Methylation profiling by high throughput sequencing	Homo sapiens Mus musculus	62	TXT SRA Run Selector	Maya Sen	Feb 13, 2020
GSE149954	Extended representation bisulfite sequencing of gene regulatory elements in multiplexed samples and single cells	Methylation profiling by high throughput sequencing	Homo sapiens Mus musculus	118	TXT SRA Run Selector	Volker Hovestadt	Mar 29, 2021
GSE155339	Aging of preleukemic thymocytes drives CpG island hypermethylation in T-cell acute lymphoblastic leukemia	Methylation profiling by genome tiling array Genome binding/occupancy profiling by high throughput sequencing Methylation profiling by high throughput sequencing Expression profiling by high throughput sequencing	Homo sapiens Mus musculus	259	IDAT TAB	Juliette Roels	Sep 24, 2020
GSE155994	Comparative analysis of glioblastoma initiating cells and patient-matched EPSC-derived neural stem cells as a discovery tool and drug matching strategy	Expression profiling by high throughput sequencing Methylation profiling by high throughput sequencing Methylation profiling by genome tiling array	Homo sapiens Mus musculus	156	COV IDAT	Silvia Marino	Sep 17, 2021
GSE165023	Sstr2 knockout mice	Expression profiling by high throughput sequencing Methylation profiling by high throughput sequencing	Homo sapiens Mus musculus	52	BIGWIG BW MTX TSV	Byoung-Ha Yoon	Jan 04, 2023
GSE183556	MSL2 is an allelic dosage sensor in mammals	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Methylation profiling by high throughput sequencing Other	Homo sapiens Mus musculus	550	BEDPE TXT	Asifa Akhtar	Aug 10, 2023
GSE183934	Perturbation of TET2 condensation induces genome-wide promiscuous DNA hypomethylation and curtails leukemia cell growth	Methylation profiling by high throughput sequencing	Homo sapiens Mus musculus	50	BW HIC TXT SRA Run Selector	Jia Li	Jun 16, 2024
GSE184470	Evidence that direct inhibition of transcription factor binding is the prevailing mode of gene and repeat repression by DNA methylation	Genome binding/occupancy profiling by high throughput sequencing Expression profiling by high throughput sequencing Methylation profiling by high throughput sequencing	Homo sapiens Mus musculus	98	WIG	Dirk Schuebeler	Sep 29, 2022
GSE186007	LABS: linear amplification-based bisulfite sequencing for ultrasensitive cancer detection from cell-free DNA	Methylation profiling by high throughput sequencing	Homo sapiens Mus musculus	106	COV SRA Run Selector	Xiaolong Cui	Apr 24, 2024
GSE200839	TNRC18 recognizes H3K9me3 to mediate transposable elements silencing at ERV regions	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Methylation profiling by high throughput sequencing	Homo sapiens Mus musculus	115	BW TXT	Gang Greg Wang	Jul 23, 2023