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41842 series

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Accession	Title	Series type(s)	Organism(s)	Samples	Supplementary	Contact	Release date
Filter		Genome binding/occupancy profiling by high throughput sequencing
GSE221496	Transcription factor shapes chromosomal conformation and regulates gene expression in bacterial adaptation [ChIP-Seq]	Genome binding/occupancy profiling by high throughput sequencing	Zymomonas mobilis	10	BW NARROWPEAK	Mao Chen	May 17, 2024
GSE221499	Transcription factor shapes chromosomal conformation and regulates gene expression in bacterial adaptation	Genome binding/occupancy profiling by high throughput sequencing Other Expression profiling by high throughput sequencing	Zymomonas mobilis	35	BW NARROWPEAK TXT	Mao Chen	May 16, 2024
GSE254496	MaizeCODE reveals bi-directionally expressed enhancers that harbor molecular signatures of maize domestication	Genome binding/occupancy profiling by high throughput sequencing Expression profiling by high throughput sequencing Non-coding RNA profiling by high throughput sequencing	Zea mays subsp. parviglumis Zea mays	226	BROADPEAK BW NARROWPEAK TXT	Jonathan Cahn	Feb 23, 2024
GSE97458	Genome-wide characterization of cis-acting DNA targets of Opaque11 in maize	Genome binding/occupancy profiling by high throughput sequencing	Zea mays subsp. mays	2	BED TXT SRA Run Selector	Weiwei Qi	Oct 01, 2017
GSE15286	Epigenetic modifications and their relationships to smRNA and mRNA transcriptomes in maize	Genome binding/occupancy profiling by high throughput sequencing Non-coding RNA profiling by high throughput sequencing Expression profiling by high throughput sequencing Methylation profiling by high throughput sequencing	Zea mays	14	BED FA TXT SRA Run Selector	Xiangfeng Wang	Apr 28, 2009
GSE38587	The P1 Transcription Factor Binding to the Genome	Genome binding/occupancy profiling by high throughput sequencing	Zea mays	4	BED SRA Run Selector	Erich Grotewold	Sep 14, 2012
GSE39161	Unraveling the KNOTTED1 regulatory network in maize meristems (ChIP-seq)	Genome binding/occupancy profiling by high throughput sequencing	Zea mays	6	BED SRA Run Selector	Erich Grotewold	Sep 04, 2012
GSE43138	Fine structure analysis and epigenetic properties of a de novo centromere on a chromosome fragment in maize	Genome binding/occupancy profiling by high throughput sequencing Methylation profiling by high throughput sequencing	Zea mays	3	BED TXT SRA Run Selector	Junling Pang	Jun 25, 2013
GSE43140	Functional centromere lost centromeric specific sequences but gain new sequences from nearby chromosomal arm.	Genome binding/occupancy profiling by high throughput sequencing Methylation profiling by high throughput sequencing	Zea mays	4	BED TXT SRA Run Selector	Junling Pang	Jun 25, 2013
GSE43142	Conservation and Divergence of Transcriptomic and Epigenomic Variations in Maize Hybrids	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Methylation profiling by high throughput sequencing Non-coding RNA profiling by high throughput sequencing	Zea mays	46	TXT SRA Run Selector	Xuncheng Wang	Mar 19, 2013
GSE51048	Regulatory Modules Controlling Maize Inflorescence Architecture: ChIP-seq data	Genome binding/occupancy profiling by high throughput sequencing	Zea mays	8	TXT SRA Run Selector	Andrea L Eveland	Nov 27, 2013
GSE51050	Regulatory Modules Controlling Maize Inflorescence Architecture	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Zea mays	40	TXT	Andrea L Eveland	Nov 27, 2013
GSE55701	Genomic features shaping the landscape of meiotic double-strand break hotspots in maize [ChIP-Seq]	Genome binding/occupancy profiling by high throughput sequencing	Zea mays	9	BED SRA Run Selector	Wojciech Pawlowski	Jul 08, 2016
GSE59124	Sequential centromere shift via de novo formation in maize	Genome binding/occupancy profiling by high throughput sequencing	Zea mays	6	BEDGRAPH SRA Run Selector	Handong Su	Mar 03, 2015
GSE60143	In vitro, genomic context identification of transcription factor binding sites	Other Genome binding/occupancy profiling by high throughput sequencing	Zea mays Arabidopsis thaliana	941	NARROWPEAK	Joseph R Ecker	May 25, 2016
GSE61954	FASCIATED EAR4 encodes a bZIP transcription factor that controls shoot meristem size in maize	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Zea mays	10	TXT SRA Run Selector	Andrea L Eveland	Jan 21, 2015
GSE63991	Genome-wide characterization of cis-acting DNA targets of Opaque2 in maize	Genome binding/occupancy profiling by high throughput sequencing	Zea mays	2	BED TXT SRA Run Selector	Chaobin Li	Mar 06, 2015
GSE67551	Comparative histone modification profiling revealed developmentally regulated acetylation on upstream promoters of C4 genes and potential C4 regulators	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Zea mays	6	TXT SRA Run Selector	Christoph Peterhansel	Sep 03, 2015
GSE67655	Temporal Shift of Circadian-Mediated Gene Expression and Carbon Fixation Contributes to Biomass Heterosis in Maize Hybrids	Genome binding/occupancy profiling by high throughput sequencing	Zea mays	48	TXT SRA Run Selector	Dae Kwan Ko	Jun 30, 2016
GSE76533	Epigenetic characteristics and gene-expression analysis of Derivative 3-3 de novo centromere in maize	Expression profiling by high throughput sequencing Methylation profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Zea mays	5	DIFF TXT SRA Run Selector	Handong Su	Aug 05, 2016