GEO Browser - GEO

Series

Samples

Platforms

DataSets

34 series

Export

Accession	Title	Series type(s)	Organism(s)	Samples	Supplementary	Contact	Release date
Filter		Genome binding/occupancy profiling by high throughput sequencing	Bos taurus		SRA Run Selector
GSE38973	ChIP-seq of bovine cells (MDBK) to study butyrate-induced histone modification	Genome binding/occupancy profiling by high throughput sequencing	Bos taurus	10	TAR SRA Run Selector	Congjun Li	Jan 24, 2014
GSE47843	Sequencing and genome-wide mapping of 146 bp mono-nucleosomal DNA from human and bovine sperm	Genome binding/occupancy profiling by high throughput sequencing	Bos taurus Homo sapiens	4	BED SRA Run Selector	Birgit Samans	Jul 08, 2014
GSE61936	Genome-wide H3K4me3 analysis in Angus cattle with divergent tenderness	Genome binding/occupancy profiling by high throughput sequencing	Bos taurus	2	BED BEDGRAPH TXT SRA Run Selector	Jose Adrian Carrillo	Mar 31, 2015
GSE68507	Cross-species comparison of epigenetic poising in the mammalian germ line	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Bos taurus Gallus gallus Homo sapiens Macaca mulatta Monodelphis domestica Mus musculus	87	TXT SRA Run Selector	Bluma J Lesch	May 07, 2016
GSE71341	The repressive regulatory role of H3K27me3 histone mark in bovine mastitis resistance to Staphylococcus aureus	Genome binding/occupancy profiling by high throughput sequencing	Bos taurus	6	TAR SRA Run Selector	Yanghua He	Feb 10, 2017
GSE80376	Single Cas9 nickase induced generation of NRAMP1 knockin cattle with reduced off-target effects	Genome binding/occupancy profiling by high throughput sequencing	Bos taurus	8	XLSX SRA Run Selector	Yuanpeng Gao	Dec 14, 2016
GSE81488	In fetal testis, SOX9 acts on transcription and splicing of its targets genes through binding to genomic regions with conserved signatures [ChIP-seq]	Genome binding/occupancy profiling by high throughput sequencing	Bos taurus Mus musculus	6	BED SRA Run Selector	Francis Poulat	Dec 15, 2016
GSE85836	Genome-wide mapping of MAT2A-associsted regions in bovine blastocysts	Genome binding/occupancy profiling by high throughput sequencing	Bos taurus	6	BED SRA Run Selector	Shuntaro Ikeda	Jun 19, 2017
GSE103734	Genome-wide histone modification profiling of inner cell mass and trophoectoderm of blastocyst stage bovine embryos by novel low input RAT-ChIP	Genome binding/occupancy profiling by high throughput sequencing	Bos taurus Homo sapiens	43	BW SRA Run Selector	Tõnis Org	Nov 15, 2019
GSE116731	Initial host response to mycobacterial infection is orchestrated through H3K4 methylation-mediated RNA polymerase II binding at key immune function genes [ChIP-seq]	Genome binding/occupancy profiling by high throughput sequencing	Bos taurus	14	BW SRA Run Selector	Thomas Hall	Jul 05, 2019
GSE129418	Systematic Discovery and Characterization of Chromatin States and Butyrate-induced Variations for Cattle Genome Functional Annotation [dataset 3]	Genome binding/occupancy profiling by high throughput sequencing	Bos taurus	4	XLSX SRA Run Selector	George E. Liu	Jul 24, 2019
GSE129419	Systematic Discovery and Characterization of Chromatin States and Butyrate-induced Variations for Cattle Genome Functional Annotation [dataset 4]	Genome binding/occupancy profiling by high throughput sequencing	Bos taurus	11	XLSX SRA Run Selector	George E. Liu	Jul 24, 2019
GSE129420	Systematic Discovery and Characterization of Chromatin States and Butyrate-induced Variations for Cattle Genome Functional Annotation [dataset 5]	Genome binding/occupancy profiling by high throughput sequencing	Bos taurus	9	BED SRA Run Selector	George E. Liu	Jul 24, 2019
GSE129421	Systematic Discovery and Characterization of Chromatin States and Butyrate-induced Variations for Cattle Genome Functional Annotation [dataset 6]	Genome binding/occupancy profiling by high throughput sequencing	Bos taurus	9	BED SRA Run Selector	George E. Liu	Jul 24, 2019
GSE129422	Systematic Discovery and Characterization of Chromatin States and Butyrate-induced Variations for Cattle Genome Functional Annotation [dataset 7]	Genome binding/occupancy profiling by high throughput sequencing	Bos taurus	9	BED SRA Run Selector	George E. Liu	Jul 24, 2019
GSE132379	Creb5 establishes the competence for Prg4 expression in articular cartilage	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Bos taurus	8	BW TXT SRA Run Selector	Ramesh Shivdasani	Mar 16, 2021
GSE143658	Chromatin remodeling in bovine embryos indicates species-specific regulation of genome activation	Genome binding/occupancy profiling by high throughput sequencing	Bos taurus	30	BROADPEAK BW SRA Run Selector	Michelle M Halstead	May 05, 2020
GSE145040	The landscape of accessible chromatin in bovine oocytes and early embryos	Genome binding/occupancy profiling by high throughput sequencing	Bos taurus	56	TXT SRA Run Selector	Zongliang Jiang	Nov 21, 2020
GSE148056	Elucidation of the open chromatin regions in the bronchial lymph nodes of dairy calves experimentally challenged with bovine respiratory syncytial virus, using ATAC-Seq	Genome binding/occupancy profiling by high throughput sequencing	Bos taurus	18	NARROWPEAK SRA Run Selector	Dayle Johnston	Jan 13, 2021
GSE157053	Profiling of histone modifications in bovine embryonic stem cells	Genome binding/occupancy profiling by high throughput sequencing	Bos taurus	4	BED BW SRA Run Selector	Michelle M Halstead	Aug 29, 2020