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22 series

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Accession	Title	Series type(s)	Organism(s)	Samples	Supplementary	Contact	Release date
Filter		Genome binding/occupancy profiling by high throughput sequencing	Canis lupus familiaris
GSE22078	[E-TABM-722] Transcription factor binding evolution in five vertebrates	Genome binding/occupancy profiling by high throughput sequencing	Canis lupus familiaris Gallus gallus Homo sapiens Monodelphis domestica Mus musculus	61	SRA Run Selector	European Bioinformatics Institute	Jun 02, 2010
GSE38079	Composition and organization of active centromere sequences in complex genomes	Genome binding/occupancy profiling by high throughput sequencing	Canis lupus familiaris	1	BED SRA Run Selector	Karen Elizabeth Hayden	Jul 23, 2012
GSE77543	Dynamics of NRSF/REST motif evolution favor the canonical NRSE/RE1 form	Genome binding/occupancy profiling by high throughput sequencing	Canis lupus familiaris Equus caballus Mus musculus	9	TXT SRA Run Selector	Shan Jiang	Jan 01, 2024
GSE80662	Identification of TWIST1 transcriptional targets in the cranial mesoderm [ChIP-Seq]	Genome binding/occupancy profiling by high throughput sequencing	Canis lupus familiaris	4	NARROWPEAK SRA Run Selector	PIERRE OSTEIL	Aug 23, 2016
GSE80663	Identification of TWIST1 transcriptional targets in the cranial mesoderm	Expression profiling by array Genome binding/occupancy profiling by high throughput sequencing	Canis lupus familiaris Mus musculus	39	NARROWPEAK	PIERRE OSTEIL	Aug 23, 2016
GSE129822	ATAC-seq for MDCKII 3D and 2D epithelial morphogenesis	Genome binding/occupancy profiling by high throughput sequencing	Canis lupus familiaris	7	BW SRA Run Selector	Shaying Zhao	Sep 25, 2020
GSE129824	ATAC-seq and RNA-seq for MDCKII 3D and 2D epithelial morphogenesis	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Canis lupus familiaris	36	BW TXT	Shaying Zhao	Sep 25, 2020
GSE142238	Cross-species analysis of melanoma enhancer logic using deep learning	Genome binding/occupancy profiling by high throughput sequencing	Canis lupus familiaris Danio rerio Equus caballus Homo sapiens Mus musculus Sus scrofa domesticus	23	BW SRA Run Selector	Stein Aerts	Apr 22, 2020
GSE153116	CASB: A concanavalin A-based sample barcoding strategy for single-cell sequencing	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Canis lupus familiaris Chlorocebus sabaeus Cricetulus griseus Drosophila melanogaster Homo sapiens Mus musculus Rattus norvegicus	197	H5	Guipeng Li	Mar 09, 2021
GSE156084	Validation of protein arginine methyltransferase 5 (PRMT5) as a candidate therapeutic target in the spontaneous canine model of non-Hodgkin lymphoma [ATAC-seq]	Genome binding/occupancy profiling by high throughput sequencing	Canis lupus familiaris	10	BROADPEAK BW SRA Run Selector	Ayse Selen Yilmaz	Apr 20, 2021
GSE156086	Validation of protein arginine methyltransferase 5 (PRMT5) as a candidate therapeutic target in the spontaneous canine model of non-Hodgkin lymphoma	Expression profiling by array Genome binding/occupancy profiling by high throughput sequencing	Canis lupus familiaris	20	BROADPEAK BW CEL CHP	Ayse Selen Yilmaz	Apr 20, 2021
GSE162140	A Pig BodyMap Transcriptome Reveals Diverse Tissue Physiologies and Evolutionary Dynamics of Transcription [non-human Hi-C]	Genome binding/occupancy profiling by high throughput sequencing	Canis lupus familiaris Felis catus Oryctolagus cuniculus Ovis aries Rattus norvegicus Sus scrofa	16	HIC TXT SRA Run Selector	jin long	Apr 20, 2021
GSE162148	A Pig BodyMap Transcriptome Reveals Diverse Tissue Physiologies and Evolutionary Dynamics of Transcription	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Non-coding RNA profiling by high throughput sequencing	Canis lupus familiaris Cavia porcellus Felis catus Gallus gallus Homo sapiens Macaca mulatta Mus musculus Oryctolagus cuniculus Ovis aries Rattus norvegicus Sus scrofa	553	HIC TXT	jin long	Apr 20, 2021
GSE163779	Canine Blood ChIP-seq	Genome binding/occupancy profiling by high throughput sequencing	Canis lupus familiaris	24	NARROWPEAK SRA Run Selector	Alexander Christian Harris	Apr 13, 2021
GSE163784	Canine	Genome binding/occupancy profiling by high throughput sequencing SNP genotyping by SNP array	Canis lupus familiaris	335	IDAT NARROWPEAK	Alexander Christian Harris	Apr 13, 2021
GSE188926	Canine DUXC isoforms and functional similarity to human DUX4 [ChIP-seq]	Genome binding/occupancy profiling by high throughput sequencing	Canis lupus familiaris	5	RDA XLSX SRA Run Selector	Stephen Tapscott	Dec 03, 2021
GSE188928	Canine DUXC isoforms and functional similarity to human DUX4	Genome binding/occupancy profiling by high throughput sequencing Expression profiling by high throughput sequencing	Canis lupus familiaris	17		Stephen Tapscott	Dec 03, 2021
GSE203104	Integrated mapping of the dog epigenome (ChIP-seq)	Genome binding/occupancy profiling by high throughput sequencing	Canis lupus familiaris	131		Je-Yoel Cho	Jan 30, 2023
GSE203107	Integrated mapping of the dog epigenome	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Methylation profiling by high throughput sequencing	Canis lupus familiaris	186	BW	Je-Yoel Cho	Jan 30, 2023
GSE232642	Altered Chromatin State Drives Hypersocial Behaviors in Canids	Genome binding/occupancy profiling by high throughput sequencing	Canis lupus familiaris	18	BED BW	Dhriti Tandon	May 16, 2024