GEO Browser - GEO

Series

Samples

Platforms

DataSets

74 series

Export

Accession	Title	Series type(s)	Organism(s)	Samples	Supplementary	Contact	Release date
Filter		Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens		RDS
GSE139369	Single-cell, multi-omic analysis identifies regulatory programs in mixed phenotype acute leukemia	Genome binding/occupancy profiling by high throughput sequencing Other	Homo sapiens	38	RDS TSV SRA Run Selector	Jeffrey Michael Granja	Oct 25, 2019
GSE147672	Single-cell epigenomic identification of inherited risk loci in Alzheimer’s and Parkinson’s disease	Genome binding/occupancy profiling by high throughput sequencing Other	Homo sapiens	162	BED BIGWIG NARROWPEAK RDS TSV SRA Run Selector	Carlos Aguilar	Jul 26, 2020
GSE149683	A human cell atlas of fetal chromatin accessibility	Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens	15	CSV RDS TXT	Silvia Domcke	Nov 01, 2020
GSE162690	ArchR: An integrative and scalable software package for single-cell chromatin accessibility analysis	Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens	22	RDS TSV TXT SRA Run Selector	Michael Ryan Corces	Dec 05, 2020
GSE163018	Single cell epigenomics reveals mechanisms of human cortical development	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens	10	CSV MTX RDS SNAP TSV SRA Run Selector	Ryan Ziffra	Dec 11, 2020
GSE161685	The IPF-associated variant in MUC5B, rs35705950, resides within an enhancer that is subject to lineage- and disease-dependent epigenetic remodeling	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens	8	BED MTX RDS TBI TSV	Sarah Sasse	Dec 29, 2020
GSE164947	Transient “rest” induces functional reinvigoration and epigenetic remodeling in exhausted CAR-T cells Mediate Enhanced Antitumor Activity [ATAC-seq, ChIP-seq]	Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens	27	RDS SRA Run Selector	Evan W Weber	Jan 16, 2021
GSE165037	Single Cell Analysis of Chromatin Accessibility Reveals Genetic and Regulatory Heterogeneity in Glioblastomas	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens	12	RDS	Ramya Raviram	Jan 19, 2021
GSE168851	Spear-ATAC: Pooled, droplet-based, single-cell chromatin accessibility CRISPR screens	Genome binding/occupancy profiling by high throughput sequencing Other	Homo sapiens	38	CSV RDS TSV SRA Run Selector	Jeffrey Michael Granja	Mar 14, 2021
GSE167232	Integration of M. tuberculosis phenotype with single cell RNA-seq to interrogate host macrophage heterogeneity in vivo.	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens Mus musculus	24	CSV RDS TSV SRA Run Selector	Davide Pisu	Apr 28, 2021
GSE167381	LKB1 inactivation initiates a chromatin remodeling cascade to drive metastatic progression	Genome binding/occupancy profiling by high throughput sequencing Expression profiling by high throughput sequencing Other	Homo sapiens Mus musculus	441	BW CSV RDS TSV TXT XLSX ZIP SRA Run Selector	Jeffrey Michael Granja	Apr 30, 2021
GSE174072	Multi-omic profiling reveals widespread dysregulation of innate immunity and hematopoiesis in COVID-19	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens	70	RDS TSV SRA Run Selector	Aaron James Wilk	May 08, 2021
GSE173811	Targeting P300/CBP reveals discrete regulation of transcription and chromatin accessibility by histone acetylation [singlecellseq]	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens	4	BED RDS SRA Run Selector	Simon J Hogg	May 11, 2021
GSE174226	High-content single-cell combinatorial indexing	Genome binding/occupancy profiling by high throughput sequencing Other	Homo sapiens Mus musculus	6	BED CSV RDS TSV TXT SRA Run Selector	Ryan M Mulqueen	May 28, 2021
GSE166547	Cell type-specific chromatin accessibility in kidney.	Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens	2	BED CSV RDS SRA Run Selector	Jingping Yang	Sep 30, 2021
GSE150527	Comprehensive epigenomic profiling of human alveolar epithelial differentiation identifies key epigenetic states and transcription factor co-regulatory networks for maintenance of distal lung identity	Methylation profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Expression profiling by high throughput sequencing Other	Homo sapiens	48	BIGWIG BW RDS TAB WIG SRA Run Selector	Crystal N Marconett	Oct 27, 2021
GSE182685	Mitochondrial variant enrichment from high-throughput single-cell RNA-seq resolves clonal populations	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Other	Homo sapiens	22	CSV H5 RDS TSV TXT SRA Run Selector	Peter van Galen	Dec 08, 2021
GSE173798	Glucocorticoid inducton of DDIT4 transcription	Genome binding/occupancy profiling by high throughput sequencing Other	Homo sapiens	71	BW RDS SRA Run Selector	Jackson Andrew Hoffman	Jan 24, 2022
GSE193240	A primed immune transcriptional programme is activated in oligodendroglia in multiple sclerosis [ATAC-Seq and RNA-Seq II]	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens	4	BED BEDPE H5 RDS TBI TSV WIG	Eneritz Agirre	Jan 28, 2022
GSE197289	Human and mouse trigeminal ganglia cell atlas implicates multiple cell types in migraine	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens Mus musculus	36	CSV RDS	Lite Yang	Feb 26, 2022