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292 series

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Accession	Title	Series type(s)	Organism(s)	Samples	Supplementary	Contact	Release date
Filter		Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens		MTX
GSE87064	The Dynamic Epigenetic Landscape of the Retina During Development, Reprogramming, and Tumorigenesis	Genome binding/occupancy profiling by high throughput sequencing Expression profiling by high throughput sequencing Methylation profiling by high throughput sequencing Other	Homo sapiens Mus musculus	868	BED BW MTX TSV TXT	Beisi Xu	May 03, 2017
GSE97178	Hybrid stomach-intestinal chromatin states underlie human Barrett’s metaplasia	Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens	40	BED BW MTX TSV SRA Run Selector	Ramesh Shivdasani	Jun 03, 2021
GSE98448	Topological demarcation by HMGB2 is disrupted early upon senescence entry and induces CTCF clustering across cell types	Genome binding/occupancy profiling by high throughput sequencing Expression profiling by high throughput sequencing Other	Homo sapiens	53	BEDPE MTX TSV TXT	Milos Nikolic	Apr 25, 2018
GSE126074	Simultaneous profiling of transcriptome and chromatin accessibility in single nucleus	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens Mus musculus	36	MTX TSV SRA Run Selector	Song Chen	Feb 05, 2019
GSE126117	RNA-seq, ATAC-seq and Hi-C profiles of B cells and naïve and activated T cells from human peripheral blood	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Other	Homo sapiens	30	MTX TXT	Gordon K Smyth	Jan 21, 2021
GSE127937	Early commitment genes drive fast, irreversible commitment to human embryonic stem cell differentiation	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens	43	MTX TSV TXT	Silvia DM Santos	Apr 19, 2020
GSE128671	Replicational dilution of H3K27me3 in mammalian cells and the role of poised promoters	Genome binding/occupancy profiling by high throughput sequencing Expression profiling by high throughput sequencing	Homo sapiens Mus musculus	47	BW MTX TSV TXT SRA Run Selector	Ramesh Shivdasani	Jan 17, 2020
GSE129785	Massively parallel single-cell chromatin landscapes of human immune cell development and intratumoral T cell exhaustion	Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens Mus musculus	67	MTX TSV TXT SRA Run Selector	Preyas Shah	Apr 16, 2019
GSE130025	Transcriptional programs define intratumoral heterogeneity of Ewing sarcoma at single cell resolution	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens	996	BED MTX TSV TXT XLSX	Olivier Delattre	Feb 14, 2020
GSE130345	Histone crotonylation	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens	24	BW MTX TSV	Jian-Liang Li	Feb 23, 2021
GSE132065	Sampling time-dependent artifacts in single-cell genomics studies	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens	408	BED MTX TSV SRA Run Selector	Gustavo Rodriguez-Esteban	Apr 27, 2020
GSE132558	An OTX2-PAX3 signaling axis regulates Group 3 medulloblastoma cell fate	Genome binding/occupancy profiling by high throughput sequencing Expression profiling by high throughput sequencing	Homo sapiens	18	MTX TSV TXT	Tamra Werbowetski-Ogilvie	Jun 11, 2020
GSE133417	A Congenital Anemia Dissociates the Pleiotropic Functions of Master Transcription Factor GATA1	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens Mus musculus	60	BW MTX NARROWPEAK TSV	Caleb Lareau	Dec 31, 2021
GSE135357	Stress-induced RNA–chromatin interactions promote endothelial dysfunction	Expression profiling by high throughput sequencing Other Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens	32	BEDPE MTX TSV TXT	Sheng Zhong	Aug 17, 2020
GSE136950	genesorteR: Feature Ranking in Clustered Single Cell Data	Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens	1	MTX TXT SRA Run Selector	Mahmoud M Ibrahim	Sep 30, 2020
GSE136987	Multiplex indexing approach for the detection of DNase I hypersensitive sites in single cells	Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens	480	MTX TXT SRA Run Selector	Keji Zhao	Aug 26, 2022
GSE138794	A single cell atlas of human glioma	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Other	Homo sapiens	28	BED MTX TSV TXT	Aaron Diaz	Oct 12, 2019
GSE139136	Single-cell ATAC-Seq of Adult GBM surgical specimens	Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens	4	BED MTX TSV SRA Run Selector	Marco Gallo	Jan 27, 2021
GSE139360	Transcriptomic, epigenetic and functional analyses implicate neutrophil diversity in the pathogenesis of systemic lupus erythematosus	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens	78	BW MTX TSV	Hong-wei Sun	Nov 22, 2019
GSE139950	Chromatin-accessibility estimation from single-cell ATAC data with scOpen	Genome binding/occupancy profiling by high throughput sequencing Expression profiling by high throughput sequencing	Homo sapiens Mus musculus	12	BED MTX TSV SRA Run Selector	Zhijian Li	Sep 17, 2021