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293 series

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Accession	Title	Series type(s)	Organism(s)	Samples	Supplementary	Contact	Release date
Filter		Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens		MTX
GSE194028	Systematic benchmarking of single-cell ATAC sequencing protocols	Genome binding/occupancy profiling by high throughput sequencing Expression profiling by high throughput sequencing	Homo sapiens	56	H5AD MTX TBI TSV	Stein Aerts	May 22, 2023
GSE199576	Single cell transcriptomic analysis and Epigenomic profiling of human Axioloids	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens	16	BW MTX TSV	Cantas Alev	Nov 17, 2022
GSE142285	Designing a single cell ATAC-Seq (scATAC-Seq) dataset to validate long read RNA-Seq isoforms and benchmark scATAC-Seq analysis methods	Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens	2	BED CSV MTX TAB TSV SRA Run Selector	Shanika Amarasinghe	Dec 19, 2019
GSE244029	Single cell ATAC-sequencing analysis of human SUV39H1-knockout CAR T compared to control CAR T cells (mock) in a xenograft model of lung adenocarcinoma	Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens	6	BED CSV MTX TBI TSV	Sebastian Amigorena	Oct 31, 2023
GSE244032	SUV39H1 Ablation Enhances Long-Term CAR-T Function in Solid Tumors.	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens	42	BED CSV MTX RCC TBI TSV	Sebastian Amigorena	Oct 30, 2023
GSE193321	The transcriptional and regulatory identity of erythropoietin producing cells	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens Mus musculus	154	MTX TSV TXT	Ido Amit	Mar 13, 2023
GSE159417	Comparative regulatory analysis of single cell data reveals a novel B cell subpopulation in chronic lymphocytic leukemia	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens	4	BED MTX TSV	Joseph G Arthur	Jun 29, 2021
GSE201349	Single-cell analyses define a continuum of cell state and composition changes in the malignant transformation of polyps to colorectal cancer	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens	161	MTX TBI TSV	Winston Becker	Apr 28, 2022
GSE213394	Dynamic network-guided CRISPRi screen reveals CTCF loop constrained enhancer function in cell state transitions	Genome binding/occupancy profiling by high throughput sequencing Expression profiling by high throughput sequencing Other	Homo sapiens	82	BIGWIG HIC MTX TSV	Michael A Beer	Oct 01, 2022
GSE183684	Multi-omic Analysis of Developing Human Retina and Organoids Reveals Cell-Specific Cis-Regulatory Elements and Mechanisms of Non-Coding Genetic Disease Risk.	Genome binding/occupancy profiling by high throughput sequencing Expression profiling by high throughput sequencing	Homo sapiens	51	MTX TSV SRA Run Selector	David Beier	Nov 16, 2021
GSE148321	Dietary palmitic acid promotes a prometastatic epigenetic memory related to tumor innervation	Expression profiling by array Genome binding/occupancy profiling by high throughput sequencing Expression profiling by high throughput sequencing Other	Homo sapiens Mus musculus	1134	BROADPEAK BW CEL MTX TSV XLS ZIP	Antoni Berenguer-LLergo	Nov 16, 2021
GSE252524	Chronic exposure to glucocorticoids amplifies inhibitory neuron cell fate during human neurodevelopment in organoids.	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens	36	CSV H5 MTX TBI TSV	Elisabeth Binder	Jan 22, 2024
GSE267646	Novel Long Noncoding RNA HEAT4 Affects Monocyte Subtypes, Reducing Inflammation and Promoting Vascular Healing	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Other	Homo sapiens	53	BW MTX TSV	Jes-Niels Boeckel	Jul 15, 2024
GSE182150	PU.1 and MYC transcriptional network defines a synergist drug response to combined KIT and LSD1 inhibition in acute myeloid leukemia	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Other	Homo sapiens	144	BED BW MTX TSV TXT SRA Run Selector	Theodore P Braun	May 29, 2022
GSE151431	Multi-functional barcoding enables high resolution study of clonal dynamics	Genome binding/occupancy profiling by high throughput sequencing Expression profiling by high throughput sequencing	Homo sapiens	17	MTX NARROWPEAK TSV TXT	Amy Brock	Apr 18, 2021
GSE183771	Epigenetic profiling of cycling endometrium at single-cell resolution	Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens	13	BED MTX TSV SRA Run Selector	Jan J Brosens	Mar 30, 2023
GSE210146	Integrated multiomics (scATACseq and scRNAseq) of 2D10 cells treated with small molecules for 24hrs	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens	8	H5 MTX TSV	Edward Patrick Browne	Dec 30, 2023
GSE216404	Multi-scale chromatin footprinting reveals wide-spread alterations to the structure of DNA regulatory elements [SHARE-Seq]	Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens	1	BED MTX TSV	Jason Buenrostro	Mar 29, 2023
GSE216462	Multi-scale chromatin footprinting reveals wide-spread alterations to the structure of DNA regulatory elements [Human BMMC ATAC]	Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens	9	BED MTX TSV	Jason Buenrostro	Mar 29, 2023
GSE216464	Single-cell multi-scale footprinting reveals the modular organization of DNA regulatory elements	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Other	Homo sapiens Mus musculus	32	BED MTX TSV	Jason Buenrostro	Mar 28, 2023