GEO Browser - GEO

Series

Samples

Platforms

DataSets

21015 series

Export

Accession	Title	Series type(s)	Organism(s)	Samples	Supplementary	Contact	Release date
Filter		Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens
GSE97367	BioProject PRJNA381064: Convergent origination of a Drosophila-like dosage compensation mechanism in a reptile lineage (Gene expression profiling in several tetrapod species, bulk tissue RNA-seq)	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Anolis carolinensis Gallus gallus Homo sapiens Monodelphis domestica Mus musculus Ornithorhynchus anatinus Xenopus tropicalis	197	BW TXT	Diego Cortez	Oct 27, 2017
GSE21673	Relationship between nucleosome positioning and DNA methylation	Methylation profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Genome binding/occupancy profiling by genome tiling array	Arabidopsis thaliana Homo sapiens	6	CEL TXT	matteo Pellegrini	May 29, 2010
GSE21821	Relationship between nucleosome positioning and DNA methylation: Bisulfite-Seq, ChIP-Seq, and Mnase-Seq	Methylation profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Arabidopsis thaliana Homo sapiens	4	TXT SRA Run Selector	matteo Pellegrini	May 29, 2010
GSE101220	DNA replication-coupled histone modification maintains Polycomb gene silencing in plants [ChIP-Rx]	Genome binding/occupancy profiling by high throughput sequencing	Arabidopsis thaliana Homo sapiens	12	BIGWIG SRA Run Selector	Danhua Jiang	Aug 20, 2017
GSE101221	DNA replication-coupled histone modification maintains Polycomb gene silencing in plants	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Arabidopsis thaliana Homo sapiens	18	BIGWIG TXT	Danhua Jiang	Aug 20, 2017
GSE144900	Targeted reprogramming of H3K27me3 resets epigenetic memory in plant paternal chromatin [sperm - third party reanalysis]	Genome binding/occupancy profiling by high throughput sequencing Third-party reanalysis	Arabidopsis thaliana Homo sapiens		BROADPEAK BW NARROWPEAK	Michael Borg	Mar 17, 2020
GSE59801	Comparative epigenomics of human and mouse erythropoiesis	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Third-party reanalysis	Austrofundulus limnaeus Homo sapiens Mus musculus		BED BW TXT	Vijay G Sankaran	Dec 01, 2014
GSE42478	Defining a molecular roadmap of cellular reprogramming into iPS cells	Expression profiling by array Non-coding RNA profiling by array Genome binding/occupancy profiling by high throughput sequencing Methylation profiling by genome tiling array	Betapolyomavirus hominis Betapolyomavirus macacae Homo sapiens Human alphaherpesvirus 1 Human alphaherpesvirus 2 Human betaherpesvirus 5 Human gammaherpesvirus 8 Human immunodeficiency virus 1 JC polyomavirus Merkel cell polyomavirus Murid betaherpesvirus 1 Murid gammaherpesvirus 4 Mus musculus Rattus norvegicus human gammaherpesvirus 4	61	BIGWIG CEL PAIR TXT	Ben S. Wittner	Dec 20, 2012
GSE241969	Genome-wide distribution of 5-hydroxymethyluracil and chromatin accessibility in the Breviolum minutum genome	Genome binding/occupancy profiling by high throughput sequencing Methylation profiling by high throughput sequencing Other	Bigelowiella natans Breviolum minutum Candida albicans Homo sapiens Saccharomyces cerevisiae	34	BEDGRAPH BIGWIG	Georgi Kolev Marinov	Oct 19, 2023
GSE47843	Sequencing and genome-wide mapping of 146 bp mono-nucleosomal DNA from human and bovine sperm	Genome binding/occupancy profiling by high throughput sequencing	Bos taurus Homo sapiens	4	BED SRA Run Selector	Birgit Samans	Jul 08, 2014
GSE68507	Cross-species comparison of epigenetic poising in the mammalian germ line	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Bos taurus Gallus gallus Homo sapiens Macaca mulatta Monodelphis domestica Mus musculus	87	TXT SRA Run Selector	Bluma J Lesch	May 07, 2016
GSE103734	Genome-wide histone modification profiling of inner cell mass and trophoectoderm of blastocyst stage bovine embryos by novel low input RAT-ChIP	Genome binding/occupancy profiling by high throughput sequencing	Bos taurus Homo sapiens	43	BW SRA Run Selector	Tõnis Org	Nov 15, 2019
GSE98758	Genome-wide DNA accessibility maps and differential gene expression using ChIP-seq, ATAC-seq and RNA-seq for the human secondary fibroblast cell line hiF-T and whole worms with and without knockdown of FACT complex	Genome binding/occupancy profiling by high throughput sequencing Expression profiling by high throughput sequencing	Caenorhabditis elegans Homo sapiens	58	BIGWIG BW TSV TXT SRA Run Selector	Scott Allen Lacadie	Aug 29, 2018
GSE131616	The transcriptional coactivator CBP/p300 is an evolutionarily conserved node that promotes longevity in response to mitochondrial stress	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Caenorhabditis elegans Homo sapiens Mus musculus	57		Terytty Yang Li	Dec 07, 2020
GSE224802	spt-2 in C. elegans.	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Caenorhabditis elegans Homo sapiens	35	BW	Francesco Nicola Carelli	Feb 09, 2023
GSE116862	Chromatin structure dynamics during human cardiomyocyte differention reveals a role of HERV-H in demarcating TAD boundaries.	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Other	Callithrix jacchus Homo sapiens Pan paniscus Pan troglodytes	115	BW HIC RPKM TXT SRA Run Selector	Bing Ren	Jul 09, 2019
GSE130871	Hominin-specific regulatory elements selectively emerged in oligodendrocytes and are disrupted in autism patients	Genome binding/occupancy profiling by high throughput sequencing Expression profiling by high throughput sequencing	Callithrix jacchus Homo sapiens Macaca mulatta Pan troglodytes	49	BW NARROWPEAK TXT SRA Run Selector	Menno P Creyghton	Dec 20, 2019
GSE186958	Chromatin structure dynamics during human cardiomyocyte differention	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Other	Callithrix jacchus Homo sapiens Pan paniscus Pan troglodytes	115	BW HIC RPKM TXT	Bing Ren	Nov 01, 2021
GSE229169	Comparative single cell epigenomic analysis of gene regulatory programs in the rodent and primate motor cortex	Genome binding/occupancy profiling by high throughput sequencing Expression profiling by high throughput sequencing	Callithrix jacchus Homo sapiens Macaca mulatta Mus musculus	46	MTX TSV	Bing Ren	Oct 31, 2023
GSE22078	[E-TABM-722] Transcription factor binding evolution in five vertebrates	Genome binding/occupancy profiling by high throughput sequencing	Canis lupus familiaris Gallus gallus Homo sapiens Monodelphis domestica Mus musculus	61	SRA Run Selector	European Bioinformatics Institute	Jun 02, 2010