GEO Browser - GEO

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278 series

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Accession	Title	Series type(s)	Organism(s)	Samples	Supplementary	Contact	Release date
Filter	Platform: GPL19057	Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens
GSE65360	Single-cell chromatin accessibility data using scATAC-seq	Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens Mus musculus	1632	BED SRA Run Selector	Jason Daniel Buenrostro	Jun 17, 2015
GSE166179	A primed immune transcriptional program is activated in oligodendroglia in multiple sclerosis	Genome binding/occupancy profiling by high throughput sequencing Other Expression profiling by high throughput sequencing	Homo sapiens Mus musculus	1185	CSV H5 SF WIG	Eneritz Agirre	May 21, 2021
GSE183556	MSL2 is an allelic dosage sensor in mammals	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Methylation profiling by high throughput sequencing Other	Homo sapiens Mus musculus	550	BEDPE TXT	Asifa Akhtar	Aug 10, 2023
GSE232216	Light-Assisted Single-Stranded Open-Chromatin Analysis in K562 and Spatially Localized Neuronal Single Cells	Genome binding/occupancy profiling by high throughput sequencing Expression profiling by high throughput sequencing Third-party reanalysis Other Methylation profiling by high throughput sequencing	Homo sapiens Mus musculus	445	BED	Junhyong Kim	Oct 19, 2023
GSE231719	Light-Assisted Single-Stranded DNA Open-Chromatin Analysis in Single Spatially Localized Neuronal Cells Identifies the Capacity of Endogenous DNA to Act Catalytically [CHEX-seq]	Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens Mus musculus	417	BED MTX TXT	Junhyong Kim	Oct 19, 2023
GSE204988	Recycling of H2A-H2B provides short-term memory of chromatin states	Genome binding/occupancy profiling by high throughput sequencing Other	Homo sapiens Mus musculus	366	BW TXT	Anja Groth	Feb 06, 2023
GSE224942	Restoring Tumor Immunogenicity with Dendritic Cell Reprogramming	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens Mus musculus	356		Ilia Kurochkin	Jul 07, 2023
GSE98119	The energetics and physiological impact of cohesin extrusion	Other Genome binding/occupancy profiling by high throughput sequencing Expression profiling by high throughput sequencing	Homo sapiens Mus musculus	352	BED BEDGRAPH BW HIC NARROWPEAK TXT SRA Run Selector	Seolkyoung Jung	May 01, 2018
GSE74359	A multiplexed system for quantitative comparisons of chromatin landscapes	Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens Mus musculus	312	TDF SRA Run Selector	Peter van Galen	Oct 27, 2015
GSE172335	Nucleotide depletion promotes cell fate transitions by inducing DNA replication stress	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Other	Homo sapiens Mus musculus	284	BW CSV MTX TXT	Brian Do	May 04, 2024
GSE239603	APOE4 impairs the microglial response in Alzheimer's disease by inducing TGFbeta-mediated checkpoints	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens Mus musculus	274	BW TAR	Rayk Behrendt	Jul 31, 2023
GSE155339	Aging of preleukemic thymocytes drives CpG island hypermethylation in T-cell acute lymphoblastic leukemia	Methylation profiling by genome tiling array Genome binding/occupancy profiling by high throughput sequencing Methylation profiling by high throughput sequencing Expression profiling by high throughput sequencing	Homo sapiens Mus musculus	259	IDAT TAB	Juliette Roels	Sep 24, 2020
GSE223370	G-quadruplex DNA structure is a positive regulator of MYC transcription	Expression profiling by high throughput sequencing Other Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens Mus musculus	243	BW TXT XLSX	Larry Melidis	Feb 06, 2024
GSE212357	Stepwise activities of mSWI/SNF family chromatin remodeling complexes direct T cell activation and exhaustion	Genome binding/occupancy profiling by high throughput sequencing Expression profiling by high throughput sequencing	Homo sapiens Mus musculus	228	BROADPEAK BW NARROWPEAK TXT	Cigall Kadoch	Mar 21, 2023
GSE211192	Asymmetric distribution of H3K9me3 at replicating DNA strands silences L1 retrotransposons during S phase	Other Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens Mus musculus	220	BW	Zhiguo Zhang	Aug 17, 2023
GSE132146	Single cell RNA-seq analysis reveals the crucial role of Collagen triple helix repeat containing 1 (Cthrc1) cardiac fibroblasts for ventricular remodeling after myocardial infarction	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens Mus musculus Sus scrofa	202	BW H5	Silvia C Hernandez	Sep 29, 2020
GSE146053	A negative reciprocal regulatory axis between cyclin D1 and HNF4α modulates cell cycle progression and metabolism in the liver	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens Mus musculus	198	TXT XLS SRA Run Selector	Jeffrey H Albrecht	Jun 01, 2020
GSE186589	Epigenetic dysregulation from chromosomal transit in micronuclei	Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens Mus musculus	187	BED BIGWIG BW TDF TXT	Albert S Agustinus	Mar 13, 2023
GSE173600	Chromatin state changes induced by targeted degradation of MLL-AF9 are phenocopied by combined DOT1L and MENIN inhibition.	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens Mus musculus	186	TDF TXT XLS	Charlie Hatton	Mar 03, 2022
GSE155972	Epigenetic Silencing by SETDB1 Suppresses Tumor-cell Intrinsic Immunogenicity	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens Mus musculus	177	CSV H5 TXT WIG SRA Run Selector	Jingyi Wu	Mar 18, 2021