GEO Browser - GEO

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98 series

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Accession	Title	Series type(s)	Organism(s)	Samples	Supplementary	Contact	Release date
Filter	Platform: GPL19057	Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens		SRA Run Selector
GSE164849	Spatially mapped single-cell chromatin accessibility	Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens Mus musculus	5	CSV TXT SRA Run Selector	Andrew Adey	Jan 15, 2021
GSE142238	Cross-species analysis of melanoma enhancer logic using deep learning	Genome binding/occupancy profiling by high throughput sequencing	Canis lupus familiaris Danio rerio Equus caballus Homo sapiens Mus musculus Sus scrofa domesticus	23	BW SRA Run Selector	Stein Aerts	Apr 22, 2020
GSE146053	A negative reciprocal regulatory axis between cyclin D1 and HNF4α modulates cell cycle progression and metabolism in the liver	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens Mus musculus	198	TXT XLS SRA Run Selector	Jeffrey H Albrecht	Jun 01, 2020
GSE78688	Activity-dependent transcriptional changes in human neurons	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens Mus musculus Rattus norvegicus	43	BW SRA Run Selector	Bulent Ataman	Nov 02, 2016
GSE120063	A CHAF1B-dependent molecular switch in hematopoiesis and leukemia pathogenesis	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens Mus musculus	50	TXT SRA Run Selector	Elizabeth Thomas Bartom	Nov 12, 2018
GSE60604	An alternative pluripotent state confers interspecies chimaeric competency [ChIP-seq]	Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens Mus musculus	12	BIGWIG SRA Run Selector	Christopher Benner	May 06, 2015
GSE65360	Single-cell chromatin accessibility data using scATAC-seq	Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens Mus musculus	1632	BED SRA Run Selector	Jason Daniel Buenrostro	Jun 17, 2015
GSE117089	Joint profiling of chromatin accessibility and gene expression in thousands of single cells	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens Mus musculus	6	CSV TXT SRA Run Selector	Junyue Cao	Aug 29, 2018
GSE122877	Regulatory constraint and selection during human knee evolution drive modern osteoarthritis risk	Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens Mus musculus	20	BED SRA Run Selector	Terence D Capellini	Apr 16, 2020
GSE178869	Elucidation of differential TF binding and epigenome in response to MYCi975.	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens Mus musculus	154	BW CSV TXT XLS SRA Run Selector	Debu Chakravarti	Apr 27, 2022
GSE110061	Direct DNA crosslinking with CAP-C uncovers transcription-dependent chromatin organization at high resolution	Genome binding/occupancy profiling by high throughput sequencing Other	Drosophila melanogaster Homo sapiens Mus musculus	76	BIGWIG HIC NARROWPEAK TXT SRA Run Selector	Youzhi Cheng	Aug 22, 2020
GSE137311	Epigenomic Profiling and Single_Nucleus_RNA_Seq of Adult Human Retina, Macula, and RPE/Choroid	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens Mus musculus	75	BW TSV TXT SRA Run Selector	Timothy J Cherry	Mar 03, 2020
GSE186349	Acetylation of histone H2B marks active enhancers and predicts CBP/p300 target genes	Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens Mus musculus	41	BED BW SRA Run Selector	Chunarum Choudhary	Feb 23, 2023
GSE161920	Smarca4 inactivation promotes lineage-specific transformation and early metastatic features in the lung [scATAC-seq]	Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens Mus musculus	19	BED TXT SRA Run Selector	Carla Concepcion	Sep 07, 2021
GSE129380	An evolutionarily conserved function of polycomb silences the MHC class I antigen presentation pathway and enables immune evasion in cancer [ChIP-Seq]	Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens Mus musculus Sarcophilus harrisii	24	BROADPEAK NARROWPEAK SRA Run Selector	Mark Dawson	Sep 28, 2019
GSE185927	Distinct roles for CDK-Mediator in controlling Polycomb-dependent chromosomal interactions and priming genes for induction (ChIP-Seq)	Genome binding/occupancy profiling by high throughput sequencing	Drosophila melanogaster Homo sapiens Mus musculus	81	BW SRA Run Selector	Emilia Dimitrova	May 23, 2022
GSE172296	A myeloid maturation program initiated by nucleotide depletion during S phase [Cut & Run]	Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens Mus musculus	47	BW SRA Run Selector	Brian Do	May 04, 2024
GSE172299	A myeloid maturation program initiated by nucleotide depletion during S phase [ATAC-Seq]	Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens Mus musculus	48	BW SRA Run Selector	Brian Do	May 05, 2024
GSE115387	ZNF445 is a primary regulator of genomic imprinting	Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens Mus musculus	12	BED SRA Run Selector	Julien Duc	Jan 11, 2019
GSE77328	OmoMYC blunts promoter invasion by oncogenic MYC to inhibit gene expression characteristic of MYC-dependent tumors	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Other	Homo sapiens Mus musculus	44	TXT WIG SRA Run Selector	Martin Eilers	Oct 18, 2016