GEO Browser - GEO

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39 series

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Accession	Title	Series type(s)	Organism(s)	Samples	Supplementary	Contact	Release date
Filter	Platform: GPL19057	Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens		NARROWPEAK
GSE127257	Single cell ATAC-seq identifies broad changes in neuronal abundance and gene regulation in Down Syndrome	Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens Mus musculus	8	NARROWPEAK R TXT SRA Run Selector	Roman Spektor	May 20, 2019
GSE234573	Characterizing control of memory CD8 T cell differentiation by BTB-ZF transcription factor Zbtb20 using single cell RNA-sequencing (CUT&RUN)	Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens Mus musculus	8	BW NARROWPEAK	Edward Usherwood	Jul 03, 2023
GSE184030	Single-cell profiling of histone modifications and transcription in developmental systems with EpiDamID [bulk ChIP-seq]	Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens Mus musculus	10	BEDGRAPH BROADPEAK NARROWPEAK SRA Run Selector	Jop Kind	Apr 01, 2022
GSE234576	Characterizing control of memory CD8 T cell differentiation by BTB-ZF transcription factor Zbtb20 using single cell RNA-sequencing	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens Mus musculus	16	BW CSV H5 NARROWPEAK TBI TSV	Edward Usherwood	Jun 30, 2023
GSE123292	Satb1 integrates DNA sequence, shape, motif density and torsional stress to selectively bind a subset of putative targets in nucleosome-dense regions of the genome	Genome binding/occupancy profiling by high throughput sequencing Other	Homo sapiens Mus musculus	20	BROADPEAK BW NARROWPEAK SRA Run Selector	Jan Liphardt	May 28, 2019
GSE233796	Identifying gene combinations for targeting innate immune cells to enhance T cells activation [Med12 and Cebpb KO]	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens Mus musculus	22	BW CSV NARROWPEAK	Oren Parnas	Sep 13, 2023
GSE192555	CRISPR-ChIP to identify mechanisms of chromatin regulation [ChIP-seq]	Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens Mus musculus	23	BROADPEAK NARROWPEAK	Mark Dawson	Jul 14, 2023
GSE129380	An evolutionarily conserved function of polycomb silences the MHC class I antigen presentation pathway and enables immune evasion in cancer [ChIP-Seq]	Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens Mus musculus Sarcophilus harrisii	24	BROADPEAK NARROWPEAK SRA Run Selector	Mark Dawson	Sep 28, 2019
GSE167487	A Variant in Human AIOLOS Impairs Adaptive Immunity by Interfering with IKAROS	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens Mus musculus	26	BEDGRAPH NARROWPEAK TXT SRA Run Selector	Motoi Yamashita	May 01, 2021
GSE112230	LSD1 ablation stimulates anti-tumor immunity and enables checkpoint blockade	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens Mus musculus	29	BW CSV NARROWPEAK SRA Run Selector	Wanqiang Sheng	Jun 21, 2018
GSE134798	Nucleosomes protect DNA from irradiation-induced double strand breaks in living cells	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Non-coding RNA profiling by high throughput sequencing Other	Homo sapiens Mus musculus	34	BED BEDGRAPH NARROWPEAK	Jose Manuel Garcia-Manteiga	Jul 07, 2020
GSE163932	Serine biosynthesis is a metabolic vulnerability in FLT3-ITD-driven acute myeloid leukaemia	Genome binding/occupancy profiling by high throughput sequencing Expression profiling by high throughput sequencing	Homo sapiens Mus musculus	37	BW NARROWPEAK	Stefan Bjelosevic	Jan 13, 2021
GSE229029	Deciphering lineage specification during early embryogenesis in mouse gastruloids using integrative multi-layered proteomics	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens Mus musculus	44	MTX NARROWPEAK TSV	Suzan Stelloo	May 21, 2024
GSE195688	Lineage-Specific Differences and Inference of Regulatory Networks Governing Human Chondrocyte Development	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens Mus musculus	46	BED NARROWPEAK TXT XLSX	Daniel Richard	Apr 03, 2023
GSE183873	Epigenetic basis of oncogenic-Kras mediated epithelial-cellular proliferation and plasticity [ATAC-seq]	Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens Mus musculus	49	NARROWPEAK SRA Run Selector	Preetish Kadur Lakshminarasimha Murthy	Dec 22, 2021
GSE129382	An evolutionarily conserved function of polycomb silences the MHC class I antigen presentation pathway and enables immune evasion in cancer	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens Mus musculus Sarcophilus harrisii	54	BROADPEAK NARROWPEAK	Mark Dawson	Sep 28, 2019
GSE151823	RUNX2 is a dependency factor in immature and KMT2A-rearranged T-cell acute lymphoblastic leukemia	Genome binding/occupancy profiling by high throughput sequencing Expression profiling by high throughput sequencing	Homo sapiens Mus musculus	54	BED NARROWPEAK	Filip Matthijssens	Jun 05, 2020
GSE225527	Overexpression of FOXO1 enhances CAR T cell polyfunctionality, metabolic fitness and efficacy against solid tumors	Genome binding/occupancy profiling by high throughput sequencing Expression profiling by high throughput sequencing	Homo sapiens Mus musculus	54	MTX NARROWPEAK TSV	Kevin C sek	Jan 18, 2024
GSE237974	A novel CRISPR/Cas9 screening platform identifies an IRF1-SOCS1-mediated negative feedback loop that limits CXCL9 expression and anti-tumor immunity	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Other	Homo sapiens Mus musculus	56	NARROWPEAK	Kevin C sek	Jul 22, 2023
GSE133417	A Congenital Anemia Dissociates the Pleiotropic Functions of Master Transcription Factor GATA1	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens Mus musculus	60	BW MTX NARROWPEAK TSV	Caleb Lareau	Dec 31, 2021