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61 series

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Accession	Title	Series type(s)	Organism(s)	Samples	Supplementary	Contact	Release date
Filter		Genome binding/occupancy profiling by high throughput sequencing	Macaca mulatta
GSE233467	2-hydroxypropyl-beta-cyclodextrin treatment induces modest immune activation in healthy rhesus macaques	Genome binding/occupancy profiling by high throughput sequencing	Macaca mulatta	31	BW NARROWPEAK	Jason Brenchley	Jun 12, 2023
GSE233449	2-hydroxypropyl-beta-cyclodextrin treatment induces modest immune activation in healthy rhesus macaques [ATAC-seq]	Genome binding/occupancy profiling by high throughput sequencing	Macaca mulatta	16	BW NARROWPEAK	Jason Brenchley	Jun 12, 2023
GSE163177	3D Genome of macaque fetal brain reveals evolutionary innovations during primate corticogenesis	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Macaca mulatta	18	BED BEDPE BW HIC NARROWPEAK TXT SRA Run Selector	Yuting Liu	Dec 15, 2020
GSE162148	A Pig BodyMap Transcriptome Reveals Diverse Tissue Physiologies and Evolutionary Dynamics of Transcription	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Non-coding RNA profiling by high throughput sequencing	Canis lupus familiaris Cavia porcellus Felis catus Gallus gallus Homo sapiens Macaca mulatta Mus musculus Oryctolagus cuniculus Ovis aries Rattus norvegicus Sus scrofa	553	HIC TXT	jin long	Apr 20, 2021
GSE123038	ATAC-seq on primate adipose tissue	Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens Macaca mulatta Pan troglodytes	13	XLSX SRA Run Selector	Devjanee Swain Lenz	Jan 21, 2019
GSE188879	ATAC-seq profiling in CD14+ cells isolated from rhesus macaques vaccinated with V1-deleted DNA/ALVAC/gp120 vaccine [study 2]	Genome binding/occupancy profiling by high throughput sequencing	Macaca mulatta	24	NARROWPEAK SRA Run Selector	Massimiliano Bissa	Jan 06, 2023
GSE24538	Ab initio identification of transcription start sites (TSSs) in the Rhesus macaque genome by histone modification and RNA-Seq	Genome binding/occupancy profiling by high throughput sequencing Expression profiling by high throughput sequencing	Macaca mulatta	3	BED BEDGRAPH TXT SRA Run Selector	Dali Han	Oct 19, 2010
GSE60605	An alternative pluripotent state confers interspecies chimaeric competency	Expression profiling by array Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Methylation profiling by high throughput sequencing	Homo sapiens Macaca mulatta Mus musculus Pan troglodytes	42	BIGWIG CEL TSV	Christopher Benner	May 06, 2015
GSE111930	An endogenous retrovirus-derived long non-coding RNA promotes fetal cardiomyocyte migration in primates	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Other	Gorilla gorilla Homo sapiens Macaca mulatta Mus musculus Pan troglodytes	60	BW HIC TDF TXT SRA Run Selector	Lei Tian	Aug 11, 2020
GSE60211	An evolutionary arms race between KRAB zinc finger genes 91/93 and SVA/L1 retrotransposons	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens Macaca mulatta Mus musculus	25		Sofie Salama	Sep 29, 2014
GSE159347	Analysis of developmental imprinting dynamics in primates using SNP-free methods to identify imprinting defects in cloned placenta	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Methylation profiling by high throughput sequencing	Macaca fascicularis Macaca mulatta	29	TXT WIG SRA Run Selector	Wenhao Zhang	Sep 07, 2021
GSE180749	CHIP-Seq analysis of CREB1 binding after ALVAC vaccination	Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens Macaca mulatta	21		Adam-Nicolas Pelletier	Jul 25, 2021
GSE180748	CHIP-Seq analysis of CREB1 binding after ALVAC vaccination in NHP	Genome binding/occupancy profiling by high throughput sequencing	Macaca mulatta	15	NARROWPEAK SRA Run Selector	Adam-Nicolas Pelletier	Jul 25, 2021
GSE153083	ChIP-Seq for Rhesus monkey placenta	Genome binding/occupancy profiling by high throughput sequencing	Macaca mulatta	7	BED SRA Run Selector	Mingan Sun	Jul 31, 2021
GSE130570	Chromatin Accessibility and Transcription Dynamics During In Vitro Astrocyte Differentiation of Huntington’s Disease Monkey Pluripotent Stem Cells.	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Macaca mulatta	40	BW SRA Run Selector	Isaac Kremsky	Jun 08, 2020
GSE261968	Chromatin and gene expression profile at single nuclei level of CD45+ leukocytes from the rhesus brain parenchyma	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Macaca mulatta	8	H5 TSV	Sonny Ramirez Elizaldi	Mar 26, 2024
GSE229169	Comparative single cell epigenomic analysis of gene regulatory programs in the rodent and primate motor cortex	Genome binding/occupancy profiling by high throughput sequencing Expression profiling by high throughput sequencing	Callithrix jacchus Homo sapiens Macaca mulatta Mus musculus	46	MTX TSV	Bing Ren	Oct 31, 2023
GSE241429	Comparative single-cell multiome reveals evolutionary innovations in neural progenitor cells during primate corticogenesis	Genome binding/occupancy profiling by high throughput sequencing Expression profiling by high throughput sequencing	Macaca mulatta Mus musculus	33	BED MTX TXT	Yiming Sun	Jun 09, 2024
GSE129034	Comparison of chromatin accessibility between human and non-human primates	Genome binding/occupancy profiling by high throughput sequencing	Gorilla gorilla Homo sapiens Macaca mulatta Pan troglodytes Pongo pygmaeus	15	BED SRA Run Selector	Gregory Crawford	Oct 11, 2019
GSE253954	Conserved dorsal horn neuron subtype-specific enhancers are implicated in the genetic risk of chronic pain.	Other Genome binding/occupancy profiling by high throughput sequencing Expression profiling by high throughput sequencing	Macaca mulatta Mus musculus	17	RDS TAR	Michael Leone	Aug 01, 2024