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62 series

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Accession	Title	Series type(s)	Organism(s)	Samples	Supplementary	Contact	Release date
Filter		Genome binding/occupancy profiling by high throughput sequencing	Macaca mulatta
GSE42413	The Evolution of Lineage-Specific Regulatory Activities in the Human Embryonic Limb	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens Macaca mulatta Mus musculus	56	BAM BED BW SRA Run Selector	Justin Cotney	Jul 02, 2013
GSE24538	Ab initio identification of transcription start sites (TSSs) in the Rhesus macaque genome by histone modification and RNA-Seq	Genome binding/occupancy profiling by high throughput sequencing Expression profiling by high throughput sequencing	Macaca mulatta	3	BED BEDGRAPH TXT SRA Run Selector	Dali Han	Oct 19, 2010
GSE41128	Stress-associated H3K4 methylation accumulates during postnatal development and aging of Rhesus macaque brain	Genome binding/occupancy profiling by high throughput sequencing	Macaca mulatta	5	BED TXT SRA Run Selector	Dali Han	Apr 01, 2013
GSE60269	Epigenetic modifications are associated with inter-species gene expression variation in primates	Genome binding/occupancy profiling by high throughput sequencing Expression profiling by high throughput sequencing	Homo sapiens Macaca mulatta Pan troglodytes	98	BED SRA Run Selector	Xiang Zhou	Nov 09, 2014
GSE60838	Evolutionary changes in promoter and enhancer activity during corticogenesis (non-human)	Genome binding/occupancy profiling by high throughput sequencing	Macaca mulatta Mus musculus	39	BED BW SRA Run Selector	Steven K Reilly	Mar 06, 2015
GSE63649	Evolutionary changes in promoter and enhancer activity during human corticogenesis	Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens Macaca mulatta Mus musculus	63	BED BW	Steven K Reilly	Mar 06, 2015
GSE83306	Social status alters immune regulation and response to infection [PBMC_ATACseq]	Genome binding/occupancy profiling by high throughput sequencing	Macaca mulatta	3	BED SRA Run Selector	Noah Snyder-Mackler	Dec 31, 2017
GSE115065	Epigenetic maintenance of topological domains in the rearranged gibbon genome	Genome binding/occupancy profiling by high throughput sequencing Methylation profiling by high throughput sequencing	Macaca mulatta Nomascus leucogenys	6	BED BEDGRAPH	Lucia Carbone	May 30, 2018
GSE120271	RNA-seq and ChIP-seq for human-specific regulation of neural maturation identified by cross-primate transcriptomics	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Gorilla Homo sapiens Macaca mulatta Pan paniscus Pan troglodytes	79	BED BEDGRAPH TXT SRA Run Selector	Fred H Gage	Sep 20, 2020
GSE125755	Copper regulation of HIF-1 transcriptional activities	Genome binding/occupancy profiling by high throughput sequencing	Macaca mulatta	4	BED SRA Run Selector	Wenjing Zhang	Jan 24, 2022
GSE129034	Comparison of chromatin accessibility between human and non-human primates	Genome binding/occupancy profiling by high throughput sequencing	Gorilla gorilla Homo sapiens Macaca mulatta Pan troglodytes Pongo pygmaeus	15	BED SRA Run Selector	Gregory Crawford	Oct 11, 2019
GSE153083	ChIP-Seq for Rhesus monkey placenta	Genome binding/occupancy profiling by high throughput sequencing	Macaca mulatta	7	BED SRA Run Selector	Mingan Sun	Jul 31, 2021
GSE163177	3D Genome of macaque fetal brain reveals evolutionary innovations during primate corticogenesis	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Macaca mulatta	18	BED BEDPE BW HIC NARROWPEAK TXT SRA Run Selector	Yuting Liu	Dec 15, 2020
GSE175679	Distinct nuclear compartment-associated genome architecture in the developing mammalian brain	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens Macaca mulatta Mus musculus	62	BED BW H5 SRA Run Selector	Tomasz Nowakowski	May 28, 2021
GSE197926	TAD Evolutionary and functional characterization reveals diversity in mammalian TAD boundary properties and function	Other Genome binding/occupancy profiling by high throughput sequencing Expression profiling by high throughput sequencing	Homo sapiens Hylobates moloch Macaca mulatta Mus caroli Mus musculus Mus pahari Nomascus leucogenys Rattus norvegicus	85	BED BEDGRAPH BIGWIG BW COOL XLSX	Mariam Okhovat	Oct 20, 2023
GSE216917	Human gene regulatory evolution is driven by divergence in cis and trans	Genome binding/occupancy profiling by high throughput sequencing Expression profiling by high throughput sequencing	Homo sapiens Macaca mulatta	22	BED BW TSV	Tyler J Hansen	Dec 22, 2023
GSE241429	Comparative single-cell multiome reveals evolutionary innovations in neural progenitor cells during primate corticogenesis	Genome binding/occupancy profiling by high throughput sequencing Expression profiling by high throughput sequencing	Macaca mulatta Mus musculus	33	BED MTX TXT	Yiming Sun	Jun 09, 2024
GSE67978	Epigenomic annotation of gene regulatory alterations during evolution of the primate brain	Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens Macaca mulatta Mus musculus Pan troglodytes	98	BEDGRAPH BW NARROWPEAK TXT SRA Run Selector	Menno P Creyghton	Jan 13, 2016
GSE261044	Correlation of antigen expression with epigenetic modifications after rAAV delivery of a human Factor IX variant in mice and rhesus macaques (CnT NHP)	Genome binding/occupancy profiling by high throughput sequencing	Macaca mulatta	48	BEDGRAPH	Katja Pekrun	Mar 11, 2024
GSE261047	Correlation of antigen expression with epigenetic modifications after rAAV delivery of a human Factor IX variant in mice and rhesus macaques	Genome binding/occupancy profiling by high throughput sequencing Other	Macaca mulatta Mus musculus	64	BEDGRAPH	Katja Pekrun	Mar 11, 2024