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22 series

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Accession	Title	Series type(s)	Organism(s)	Samples	Supplementary	Contact	Release date
Filter		Genome binding/occupancy profiling by high throughput sequencing	Xenopus tropicalis		TXT
GSE56000	Enhancer chromatin signatures predict Smad2/3 binding in Xenopus	Genome binding/occupancy profiling by high throughput sequencing Expression profiling by high throughput sequencing	Xenopus tropicalis	24	TXT SRA Run Selector	Julie C Baker	Sep 17, 2014
GSE53652	Genome-wide view of TGFb/Foxh1 regulation of the early mesendoderm program [ChIP-seq]	Genome binding/occupancy profiling by high throughput sequencing	Xenopus tropicalis	5	TXT SRA Run Selector	William Chiu	Nov 07, 2014
GSE97367	BioProject PRJNA381064: Convergent origination of a Drosophila-like dosage compensation mechanism in a reptile lineage (Gene expression profiling in several tetrapod species, bulk tissue RNA-seq)	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Anolis carolinensis Gallus gallus Homo sapiens Monodelphis domestica Mus musculus Ornithorhynchus anatinus Xenopus tropicalis	197	BW TXT	Diego Cortez	Oct 27, 2017
GSE161718	Thyroid hormone receptor α controls larval intestinal epithelial cell death by regulating the CDK1 pathway	Genome binding/occupancy profiling by high throughput sequencing	Xenopus tropicalis	12	TXT SRA Run Selector	Ryan Dale	Jul 19, 2022
GSE193363	ChIP sequencing of wild-type and TRα (-/-) hindlimb with and without T3 Treatment	Genome binding/occupancy profiling by high throughput sequencing	Xenopus tropicalis	12	TXT	Ryan Dale	Jul 19, 2022
GSE214697	DNA methylation dynamics underlie metamorphic gene regulation programs in Xenopus tadpole brain [ChIP-seq]	Genome binding/occupancy profiling by high throughput sequencing	Xenopus tropicalis	2	TXT	Robert J Denver	Oct 05, 2022
GSE113186	Maternal pluripotency factors initiate extensive chromatin remodelling to predefine first response to inductive signals	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Other	Xenopus tropicalis	202	BED BEDGRAPH BW TXT SRA Run Selector	George E. Gentsch	Apr 16, 2019
GSE67974	Embryonic transcription is controlled by maternally defined chromatin state	Genome binding/occupancy profiling by high throughput sequencing Methylation profiling by high throughput sequencing Expression profiling by high throughput sequencing	Xenopus tropicalis	72	BED BW TXT SRA Run Selector	Saartje Hontelez	Dec 15, 2015
GSE72657	Tissue- and stage-specific cellular context regulates Wnt target gene expression subsequent to β-catenin recruitment	Genome binding/occupancy profiling by high throughput sequencing Expression profiling by high throughput sequencing	Xenopus tropicalis	14	BW TXT SRA Run Selector	Stefan Hoppler	Apr 25, 2016
GSE197877	Super-sized clustered loops anchored at transposon Helitrons in Xenopus tropicalis sperm associate with late gene expression during embryogenesis	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Other	Xenopus laevis Xenopus tropicalis Xenopus tropicalis x Xenopus laevis	67	BW COOL HIC TXT	Chuihui Hou	Jan 26, 2023
GSE146830	Chromatin accessibility dynamics and single cell RNA-Seq reveal new regulators of regeneration in neural progenitors	Genome binding/occupancy profiling by high throughput sequencing	Xenopus tropicalis	31	BED TXT SRA Run Selector	Anneke Dixie Kakebeen	Mar 12, 2020
GSE158331	Tissue disaggregation and isolation of specific cell types from transgenic Xenopus appendages for transcriptional analysis by FACS	Genome binding/occupancy profiling by high throughput sequencing	Xenopus tropicalis	2	TXT SRA Run Selector	Anneke Dixie Kakebeen	Sep 23, 2020
GSE175662	Chromatin Accessibility Analysis Reveals Distinct Functions for HDAC and EZH2 Activities in Early Regeneration	Genome binding/occupancy profiling by high throughput sequencing	Xenopus tropicalis	35	BED TXT SRA Run Selector	Anneke Dixie Kakebeen	May 01, 2022
GSE118024	Endodermal maternal transcription factors establish super enhancers during zygotic genome activation	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Xenopus tropicalis	39	BED TXT SRA Run Selector	Kitt D. Paraiso	Jun 04, 2019
GSE161600	Uncovering the mesendoderm gene regulatory network through multi-omic data integration	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Xenopus tropicalis	19	NARROWPEAK TXT SRA Run Selector	Kitt D. Paraiso	Mar 30, 2022
GSE172395	Maternal and zygotic factors sequentially shape the tissue regionalization of chromatin landscapes in early vertebrate embryos	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Xenopus tropicalis	26	NARROWPEAK TXT SRA Run Selector	Kitt D. Paraiso	Apr 19, 2024
GSE148783	Gain of gene regulatory network interconnectivity at the origin of vertebrates	Genome binding/occupancy profiling by high throughput sequencing Expression profiling by high throughput sequencing	Branchiostoma lanceolatum Danio rerio Ptychodera flava Xenopus tropicalis	75	TSV TXT	Juan J. Tena	Feb 26, 2022
GSE92382	Regulatory remodeling in the allo-tetraploid frog Xenopus laevis	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Xenopus laevis Xenopus tropicalis Xenopus tropicalis x Xenopus laevis	22	BED TXT SRA Run Selector	Simon van Heeringen	Sep 28, 2017
GSE14025	A Hierarchy of H3K4me3 and H3K27me3 Acquisition in Spatial Gene Regulation in Xenopus Embryos	Genome binding/occupancy profiling by high throughput sequencing Expression profiling by high throughput sequencing	Xenopus tropicalis	4	BED TXT SRA Run Selector	Gert Jan Veenstra	Sep 15, 2009
GSE21482	Nucleotide composition-linked divergence of vertebrate core promoter architecture	Genome binding/occupancy profiling by high throughput sequencing Expression profiling by high throughput sequencing	Xenopus tropicalis	3	BED TXT SRA Run Selector	Gert Jan Veenstra	Dec 30, 2010