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24 series

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Accession	Title	Series type(s)	Organism(s)	Samples	Supplementary	Contact	Release date
Filter		Genome binding/occupancy profiling by high throughput sequencing	Xenopus tropicalis		SRA Run Selector
GSE30146	HEB and E2A function as SMAD/FOXH1 cofactors	Genome binding/occupancy profiling by high throughput sequencing	Xenopus tropicalis	2	BED TXT SRA Run Selector	Se-Jin Yoon	Aug 23, 2011
GSE82153	CDK9 knock-out Xenopus tropicalis	Genome binding/occupancy profiling by high throughput sequencing	Xenopus tropicalis	2	BW SRA Run Selector	Saartje Hontelez	Feb 02, 2019
GSE158331	Tissue disaggregation and isolation of specific cell types from transgenic Xenopus appendages for transcriptional analysis by FACS	Genome binding/occupancy profiling by high throughput sequencing	Xenopus tropicalis	2	TXT SRA Run Selector	Anneke Dixie Kakebeen	Sep 23, 2020
GSE21482	Nucleotide composition-linked divergence of vertebrate core promoter architecture	Genome binding/occupancy profiling by high throughput sequencing Expression profiling by high throughput sequencing	Xenopus tropicalis	3	BED TXT SRA Run Selector	Gert Jan Veenstra	Dec 30, 2010
GSE14025	A Hierarchy of H3K4me3 and H3K27me3 Acquisition in Spatial Gene Regulation in Xenopus Embryos	Genome binding/occupancy profiling by high throughput sequencing Expression profiling by high throughput sequencing	Xenopus tropicalis	4	BED TXT SRA Run Selector	Gert Jan Veenstra	Sep 15, 2009
GSE53652	Genome-wide view of TGFb/Foxh1 regulation of the early mesendoderm program [ChIP-seq]	Genome binding/occupancy profiling by high throughput sequencing	Xenopus tropicalis	5	TXT SRA Run Selector	William Chiu	Nov 07, 2014
GSE48560	In vivo T-box Transcription Factor Profiling Reveals Joint Regulation of Embryonic Neuro-mesodermal Bipotency.	Genome binding/occupancy profiling by high throughput sequencing	Xenopus tropicalis	10	BW SRA Run Selector	George E. Gentsch	Sep 19, 2013
GSE56169	E2a is necessary for Smad2/3 dependent transcription and the direct repression of lefty	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Xenopus tropicalis	11	TXT SRA Run Selector	Andrea E. Wills	Aug 01, 2014
GSE85273	Foxh1 marks the embryonic genome prior to the activation of the mesendoderm gene regulatory program	Genome binding/occupancy profiling by high throughput sequencing Third-party reanalysis	Xenopus tropicalis	11	BED BEDGRAPH SRA Run Selector	Rebekah M Charney	Mar 30, 2017
GSE161718	Thyroid hormone receptor α controls larval intestinal epithelial cell death by regulating the CDK1 pathway	Genome binding/occupancy profiling by high throughput sequencing	Xenopus tropicalis	12	TXT SRA Run Selector	Ryan Dale	Jul 19, 2022
GSE72657	Tissue- and stage-specific cellular context regulates Wnt target gene expression subsequent to β-catenin recruitment	Genome binding/occupancy profiling by high throughput sequencing Expression profiling by high throughput sequencing	Xenopus tropicalis	14	BW TXT SRA Run Selector	Stefan Hoppler	Apr 25, 2016
GSE41161	Principles of nucleation of H3K27 methylation during embryonic development	Genome binding/occupancy profiling by high throughput sequencing	Xenopus tropicalis	16	BED WIG SRA Run Selector	Gert Jan Veenstra	Nov 28, 2013
GSE138303	ATAC-Seq of Xenopus tail regeneration	Genome binding/occupancy profiling by high throughput sequencing	Xenopus tropicalis	18	BW SRA Run Selector	Jessica Kay Chang	Jan 31, 2020
GSE161600	Uncovering the mesendoderm gene regulatory network through multi-omic data integration	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Xenopus tropicalis	19	NARROWPEAK TXT SRA Run Selector	Kitt D. Paraiso	Mar 30, 2022
GSE92382	Regulatory remodeling in the allo-tetraploid frog Xenopus laevis	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Xenopus laevis Xenopus tropicalis Xenopus tropicalis x Xenopus laevis	22	BED TXT SRA Run Selector	Simon van Heeringen	Sep 28, 2017
GSE56000	Enhancer chromatin signatures predict Smad2/3 binding in Xenopus	Genome binding/occupancy profiling by high throughput sequencing Expression profiling by high throughput sequencing	Xenopus tropicalis	24	TXT SRA Run Selector	Julie C Baker	Sep 17, 2014
GSE172395	Maternal and zygotic factors sequentially shape the tissue regionalization of chromatin landscapes in early vertebrate embryos	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Xenopus tropicalis	26	NARROWPEAK TXT SRA Run Selector	Kitt D. Paraiso	Apr 19, 2024
GSE146830	Chromatin accessibility dynamics and single cell RNA-Seq reveal new regulators of regeneration in neural progenitors	Genome binding/occupancy profiling by high throughput sequencing	Xenopus tropicalis	31	BED TXT SRA Run Selector	Anneke Dixie Kakebeen	Mar 12, 2020
GSE175662	Chromatin Accessibility Analysis Reveals Distinct Functions for HDAC and EZH2 Activities in Early Regeneration	Genome binding/occupancy profiling by high throughput sequencing	Xenopus tropicalis	35	BED TXT SRA Run Selector	Anneke Dixie Kakebeen	May 01, 2022
GSE118024	Endodermal maternal transcription factors establish super enhancers during zygotic genome activation	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Xenopus tropicalis	39	BED TXT SRA Run Selector	Kitt D. Paraiso	Jun 04, 2019