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44 series

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Accession	Title	Series type(s)	Organism(s)	Samples	Supplementary	Contact	Release date
Filter		Genome binding/occupancy profiling by high throughput sequencing	Xenopus tropicalis
GSE56000	Enhancer chromatin signatures predict Smad2/3 binding in Xenopus	Genome binding/occupancy profiling by high throughput sequencing Expression profiling by high throughput sequencing	Xenopus tropicalis	24	TXT SRA Run Selector	Julie C Baker	Sep 17, 2014
GSE199671	Conserved chromatin and repetitive patterns reveal slow genome evolution in frogs	Genome binding/occupancy profiling by high throughput sequencing	Xenopus tropicalis	11	BED TAB	Jessen V Bredeson	Mar 30, 2022
GSE145619	Combinatorial transcription factor activities on open chromatin induce embryonic heterogeneity in vertebrates	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Xenopus tropicalis	132	BED TAB TBI TSV SRA Run Selector	Ann Rose Bright	Dec 18, 2020
GSE138303	ATAC-Seq of Xenopus tail regeneration	Genome binding/occupancy profiling by high throughput sequencing	Xenopus tropicalis	18	BW SRA Run Selector	Jessica Kay Chang	Jan 31, 2020
GSE85273	Foxh1 marks the embryonic genome prior to the activation of the mesendoderm gene regulatory program	Genome binding/occupancy profiling by high throughput sequencing Third-party reanalysis	Xenopus tropicalis	11	BED BEDGRAPH SRA Run Selector	Rebekah M Charney	Mar 30, 2017
GSE53652	Genome-wide view of TGFb/Foxh1 regulation of the early mesendoderm program [ChIP-seq]	Genome binding/occupancy profiling by high throughput sequencing	Xenopus tropicalis	5	TXT SRA Run Selector	William Chiu	Nov 07, 2014
GSE53654	Genome-wide view of TGFb/Foxh1 regulation of the early mesendoderm program	Genome binding/occupancy profiling by high throughput sequencing Expression profiling by high throughput sequencing	Xenopus tropicalis	9		William Chiu	Nov 07, 2014
GSE198378	Histone deacetylase 1 maintains lineage integrity through histone acetylome refinement during early embryogenesis	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Xenopus tropicalis	45	NARROWPEAK RESULTS	Ken Cho	Mar 27, 2023
GSE97367	BioProject PRJNA381064: Convergent origination of a Drosophila-like dosage compensation mechanism in a reptile lineage (Gene expression profiling in several tetrapod species, bulk tissue RNA-seq)	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Anolis carolinensis Gallus gallus Homo sapiens Monodelphis domestica Mus musculus Ornithorhynchus anatinus Xenopus tropicalis	197	BW TXT	Diego Cortez	Oct 27, 2017
GSE161718	Thyroid hormone receptor α controls larval intestinal epithelial cell death by regulating the CDK1 pathway	Genome binding/occupancy profiling by high throughput sequencing	Xenopus tropicalis	12	TXT SRA Run Selector	Ryan Dale	Jul 19, 2022
GSE193363	ChIP sequencing of wild-type and TRα (-/-) hindlimb with and without T3 Treatment	Genome binding/occupancy profiling by high throughput sequencing	Xenopus tropicalis	12	TXT	Ryan Dale	Jul 19, 2022
GSE214697	DNA methylation dynamics underlie metamorphic gene regulation programs in Xenopus tadpole brain [ChIP-seq]	Genome binding/occupancy profiling by high throughput sequencing	Xenopus tropicalis	2	TXT	Robert J Denver	Oct 05, 2022
GSE48560	In vivo T-box Transcription Factor Profiling Reveals Joint Regulation of Embryonic Neuro-mesodermal Bipotency.	Genome binding/occupancy profiling by high throughput sequencing	Xenopus tropicalis	10	BW SRA Run Selector	George E. Gentsch	Sep 19, 2013
GSE113186	Maternal pluripotency factors initiate extensive chromatin remodelling to predefine first response to inductive signals	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Other	Xenopus tropicalis	202	BED BEDGRAPH BW TXT SRA Run Selector	George E. Gentsch	Apr 16, 2019
GSE67974	Embryonic transcription is controlled by maternally defined chromatin state	Genome binding/occupancy profiling by high throughput sequencing Methylation profiling by high throughput sequencing Expression profiling by high throughput sequencing	Xenopus tropicalis	72	BED BW TXT SRA Run Selector	Saartje Hontelez	Dec 15, 2015
GSE82153	CDK9 knock-out Xenopus tropicalis	Genome binding/occupancy profiling by high throughput sequencing	Xenopus tropicalis	2	BW SRA Run Selector	Saartje Hontelez	Feb 02, 2019
GSE72657	Tissue- and stage-specific cellular context regulates Wnt target gene expression subsequent to β-catenin recruitment	Genome binding/occupancy profiling by high throughput sequencing Expression profiling by high throughput sequencing	Xenopus tropicalis	14	BW TXT SRA Run Selector	Stefan Hoppler	Apr 25, 2016
GSE197866	Super-sized clustered loops anchored at transposon Helitrons in Xenopus tropicalis sperm associate with late gene expression during embryogenesis [ChIP-Seq]	Genome binding/occupancy profiling by high throughput sequencing	Xenopus tropicalis	20	BW	Chuihui Hou	Jan 26, 2023
GSE197867	Super-sized clustered loops anchored at transposon Helitrons in Xenopus tropicalis sperm associate with late gene expression during embryogenesis [ATAC-Seq]	Genome binding/occupancy profiling by high throughput sequencing	Xenopus tropicalis	3	BW	Chuihui Hou	Jan 26, 2023
GSE197877	Super-sized clustered loops anchored at transposon Helitrons in Xenopus tropicalis sperm associate with late gene expression during embryogenesis	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Other	Xenopus laevis Xenopus tropicalis Xenopus tropicalis x Xenopus laevis	67	BW COOL HIC TXT	Chuihui Hou	Jan 26, 2023